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Two Distinct DNA Binding Modes Guide Dual Roles of a CRISPR-Cas Protein Complex
被引:75
作者:

Blosser, Timothy R.
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Delft Univ Technol, Kavli Inst NanoSci, NL-2628 CJ Delft, Netherlands
Delft Univ Technol, Dept BioNanoSci, NL-2628 CJ Delft, Netherlands Delft Univ Technol, Kavli Inst NanoSci, NL-2628 CJ Delft, Netherlands

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Westra, Edze R.
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Wageningen Univ, Dept Agrotechnol & Food Sci, Lab Microbiol, NL-6703 HB Wageningen, Netherlands Delft Univ Technol, Kavli Inst NanoSci, NL-2628 CJ Delft, Netherlands

Vlot, Marnix
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Wageningen Univ, Dept Agrotechnol & Food Sci, Lab Microbiol, NL-6703 HB Wageningen, Netherlands Delft Univ Technol, Kavli Inst NanoSci, NL-2628 CJ Delft, Netherlands

Kunne, Tim
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Wageningen Univ, Dept Agrotechnol & Food Sci, Lab Microbiol, NL-6703 HB Wageningen, Netherlands Delft Univ Technol, Kavli Inst NanoSci, NL-2628 CJ Delft, Netherlands

Sobota, Malgorzata
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Wageningen Univ, Dept Agrotechnol & Food Sci, Lab Microbiol, NL-6703 HB Wageningen, Netherlands Delft Univ Technol, Kavli Inst NanoSci, NL-2628 CJ Delft, Netherlands

Dekker, Cees
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Delft Univ Technol, Kavli Inst NanoSci, NL-2628 CJ Delft, Netherlands
Delft Univ Technol, Dept BioNanoSci, NL-2628 CJ Delft, Netherlands Delft Univ Technol, Kavli Inst NanoSci, NL-2628 CJ Delft, Netherlands

Brouns, Stan J. J.
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Wageningen Univ, Dept Agrotechnol & Food Sci, Lab Microbiol, NL-6703 HB Wageningen, Netherlands Delft Univ Technol, Kavli Inst NanoSci, NL-2628 CJ Delft, Netherlands

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机构:
[1] Delft Univ Technol, Kavli Inst NanoSci, NL-2628 CJ Delft, Netherlands
[2] Delft Univ Technol, Dept BioNanoSci, NL-2628 CJ Delft, Netherlands
[3] Wageningen Univ, Dept Agrotechnol & Food Sci, Lab Microbiol, NL-6703 HB Wageningen, Netherlands
基金:
欧洲研究理事会;
关键词:
IN-VITRO RECONSTITUTION;
ADAPTIVE IMMUNE-SYSTEMS;
MEMORY B-CELLS;
SURVEILLANCE COMPLEX;
CRYSTAL-STRUCTURE;
RNA;
INTERFERENCE;
DEGRADATION;
CASCADE;
TRANSCRIPTION;
D O I:
10.1016/j.molcel.2015.01.028
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Small RNA-guided protein complexes play an essential role in CRISPR-mediated immunity in prokaryotes. While these complexes initiate interference by flagging cognate invader DNA for destruction, recent evidence has implicated their involvement in new CRISPR memory formation, called priming, against mutated invader sequences. The mechanism by which the target recognition complex mediates these disparate responses-interference and priming-remains poorly understood. Using single-molecule FRET, we visualize how bona fide and mutated targets are differentially probed by E. coli Cascade. We observe that the recognition of bona fide targets is an ordered process that is tightly controlled for high fidelity. Mutated targets are recognized with low fidelity, which is featured by short-lived and PAM- and seed-independent binding by any segment of the crRNA. These dual roles of Cascade in immunity with distinct fidelities underpin CRISPR-Cas robustness, allowing for efficient degradation of bona fide targets and priming of mutated DNA targets.
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收藏
页码:60 / 70
页数:11
相关论文
共 56 条
[21]
Crystal structure of a CRISPR RNA-guided surveillance complex bound to a ssDNA target
[J].
Mulepati, Sabin
;
Heroux, Annie
;
Bailey, Scott
.
SCIENCE,
2014, 345 (6203)
:1479-1484

Mulepati, Sabin
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Univ, Bloomberg Sch Publ Hlth, Dept Biochem & Mol Biol, Baltimore, MD 21205 USA Johns Hopkins Univ, Bloomberg Sch Publ Hlth, Dept Biochem & Mol Biol, Baltimore, MD 21205 USA

Heroux, Annie
论文数: 0 引用数: 0
h-index: 0
机构:
Brookhaven Natl Lab, Photon Sci Directorate, Upton, NY 11973 USA Johns Hopkins Univ, Bloomberg Sch Publ Hlth, Dept Biochem & Mol Biol, Baltimore, MD 21205 USA

Bailey, Scott
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Univ, Bloomberg Sch Publ Hlth, Dept Biochem & Mol Biol, Baltimore, MD 21205 USA Johns Hopkins Univ, Bloomberg Sch Publ Hlth, Dept Biochem & Mol Biol, Baltimore, MD 21205 USA
[22]
In Vitro Reconstitution of an Escherichia coli RNA-guided Immune System Reveals Unidirectional, ATP-dependent Degradation of DNA Target
[J].
Mulepati, Sabin
;
Bailey, Scott
.
JOURNAL OF BIOLOGICAL CHEMISTRY,
2013, 288 (31)
:22184-22192

Mulepati, Sabin
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Univ, Bloomberg Sch Publ Hlth, Dept Biochem & Mol Biol, Baltimore, MD 21205 USA Johns Hopkins Univ, Bloomberg Sch Publ Hlth, Dept Biochem & Mol Biol, Baltimore, MD 21205 USA

Bailey, Scott
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Univ, Bloomberg Sch Publ Hlth, Dept Biochem & Mol Biol, Baltimore, MD 21205 USA Johns Hopkins Univ, Bloomberg Sch Publ Hlth, Dept Biochem & Mol Biol, Baltimore, MD 21205 USA
[23]
Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA
[J].
Nishimasu, Hiroshi
;
Ran, F. Ann
;
Hsu, Patrick D.
;
Konermann, Silvana
;
Shehata, Soraya I.
;
Dohmae, Naoshi
;
Ishitani, Ryuichiro
;
Zhang, Feng
;
Nureki, Osamu
.
CELL,
2014, 156 (05)
:935-949

Nishimasu, Hiroshi
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan
JST, PRESTO, Bunkyo Ku, Tokyo 1130032, Japan Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan

Ran, F. Ann
论文数: 0 引用数: 0
h-index: 0
机构:
Broad Inst MIT & Harvard, Cambridge, MA 02141 USA
MIT, McGovern Inst Brain Res, Cambridge, MA 02139 USA
MIT, Dept Brain & Cognit Sci, Cambridge, MA 02139 USA
MIT, Dept Biol Engn, Cambridge, MA 02139 USA
Harvard Univ, Dept Mol & Cellular Biol, Cambridge, MA 02138 USA Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan

Hsu, Patrick D.
论文数: 0 引用数: 0
h-index: 0
机构:
Broad Inst MIT & Harvard, Cambridge, MA 02141 USA
MIT, McGovern Inst Brain Res, Cambridge, MA 02139 USA
MIT, Dept Brain & Cognit Sci, Cambridge, MA 02139 USA
MIT, Dept Biol Engn, Cambridge, MA 02139 USA
Harvard Univ, Dept Mol & Cellular Biol, Cambridge, MA 02138 USA Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan

Konermann, Silvana
论文数: 0 引用数: 0
h-index: 0
机构:
Broad Inst MIT & Harvard, Cambridge, MA 02141 USA
MIT, McGovern Inst Brain Res, Cambridge, MA 02139 USA
MIT, Dept Brain & Cognit Sci, Cambridge, MA 02139 USA
MIT, Dept Biol Engn, Cambridge, MA 02139 USA Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan

Shehata, Soraya I.
论文数: 0 引用数: 0
h-index: 0
机构:
Broad Inst MIT & Harvard, Cambridge, MA 02141 USA
MIT, McGovern Inst Brain Res, Cambridge, MA 02139 USA
MIT, Dept Brain & Cognit Sci, Cambridge, MA 02139 USA
MIT, Dept Biol Engn, Cambridge, MA 02139 USA Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan

Dohmae, Naoshi
论文数: 0 引用数: 0
h-index: 0
机构:
RIKEN, Biomol Characterizat Team, Wako, Saitama 3510198, Japan
RIKEN, CREST JST, Wako, Saitama 3510198, Japan Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan

Ishitani, Ryuichiro
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan

Zhang, Feng
论文数: 0 引用数: 0
h-index: 0
机构:
Broad Inst MIT & Harvard, Cambridge, MA 02141 USA
MIT, McGovern Inst Brain Res, Cambridge, MA 02139 USA
MIT, Dept Brain & Cognit Sci, Cambridge, MA 02139 USA
MIT, Dept Biol Engn, Cambridge, MA 02139 USA Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan

Nureki, Osamu
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan Univ Tokyo, Grad Sch Sci, Dept Biophys & Biochem, Bunkyo Ku, Tokyo 1130032, Japan
[24]
Memory B cells, but not long-lived plasma cells, possess antigen specificities for viral escape mutants
[J].
Purtha, Whitney E.
;
Tedder, Thomas F.
;
Johnson, Syd
;
Bhattacharya, Deepta
;
Diamond, Michael S.
.
JOURNAL OF EXPERIMENTAL MEDICINE,
2011, 208 (13)
:2599-2606

Purtha, Whitney E.
论文数: 0 引用数: 0
h-index: 0
机构:
Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO 63110 USA Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO 63110 USA

Tedder, Thomas F.
论文数: 0 引用数: 0
h-index: 0
机构:
Duke Univ, Med Ctr, Dept Immunol, Durham, NC 27710 USA Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO 63110 USA

Johnson, Syd
论文数: 0 引用数: 0
h-index: 0
机构:
MacroGenics Inc, Rockville, MD 20850 USA Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO 63110 USA

Bhattacharya, Deepta
论文数: 0 引用数: 0
h-index: 0
机构:
Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO 63110 USA Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO 63110 USA

Diamond, Michael S.
论文数: 0 引用数: 0
h-index: 0
机构:
Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO 63110 USA
Washington Univ, Sch Med, Dept Med, St Louis, MO 63110 USA
Washington Univ, Sch Med, Dept Mol Microbiol, St Louis, MO 63110 USA Washington Univ, Sch Med, Dept Pathol & Immunol, St Louis, MO 63110 USA
[25]
Site-specific chemical protein conjugation using genetically encoded aldehyde tags
[J].
Rabuka, David
;
Rush, Jason S.
;
deHart, Gregory W.
;
Wu, Peng
;
Bertozzi, Carolyn R.
.
NATURE PROTOCOLS,
2012, 7 (06)
:1052-1067

Rabuka, David
论文数: 0 引用数: 0
h-index: 0
机构:
Redwood Biosci Inc, Emeryville, CA USA Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA

Rush, Jason S.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA

deHart, Gregory W.
论文数: 0 引用数: 0
h-index: 0
机构:
Redwood Biosci Inc, Emeryville, CA USA Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA

Wu, Peng
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA

Bertozzi, Carolyn R.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
Univ Calif Berkeley, Howard Hughes Med Inst, Berkeley, CA 94720 USA Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA
[26]
Nonblinking and longlasting single-molecule fluorescence imaging
[J].
Rasnik, Ivan
;
McKinney, Sean A.
;
Ha, Taekjip
.
NATURE METHODS,
2006, 3 (11)
:891-893

Rasnik, Ivan
论文数: 0 引用数: 0
h-index: 0
机构:
Emory Univ, Dept Phys, Atlanta, GA 30322 USA Emory Univ, Dept Phys, Atlanta, GA 30322 USA

McKinney, Sean A.
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Phys, Atlanta, GA 30322 USA

Ha, Taekjip
论文数: 0 引用数: 0
h-index: 0
机构: Emory Univ, Dept Phys, Atlanta, GA 30322 USA
[27]
CRISPR interference: a structural perspective
[J].
Reeks, Judith
;
Naismith, James H.
;
White, Malcolm F.
.
BIOCHEMICAL JOURNAL,
2013, 453
:155-166

Reeks, Judith
论文数: 0 引用数: 0
h-index: 0
机构:
Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland

Naismith, James H.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland

White, Malcolm F.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland
[28]
Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer
[J].
Richter, Corinna
;
Dy, Ron L.
;
McKenzie, Rebecca E.
;
Watson, Bridget N. J.
;
Taylor, Corinda
;
Chang, James T.
;
McNeil, Matthew B.
;
Staals, Raymond H. J.
;
Fineran, Peter C.
.
NUCLEIC ACIDS RESEARCH,
2014, 42 (13)
:8516-8526

Richter, Corinna
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand

Dy, Ron L.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand

McKenzie, Rebecca E.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand

Watson, Bridget N. J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand

Taylor, Corinda
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand

Chang, James T.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand

McNeil, Matthew B.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand

Staals, Raymond H. J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand

Fineran, Peter C.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand Univ Otago, Dept Microbiol & Immunol, Dunedin 9054, New Zealand
[29]
Bacterial replication, transcription and translation: mechanistic insights from single-molecule biochemical studies
[J].
Robinson, Andrew
;
van Oijen, Antoine M.
.
NATURE REVIEWS MICROBIOLOGY,
2013, 11 (05)
:303-315

论文数: 引用数:
h-index:
机构:

van Oijen, Antoine M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Groningen, Zernike Inst Adv Mat, NL-9747 AG Groningen, Netherlands Univ Groningen, Zernike Inst Adv Mat, NL-9747 AG Groningen, Netherlands
[30]
Structure of the CRISPR Interference Complex CSM Reveals Key Similarities with Cascade
[J].
Rouillon, Christophe
;
Zhou, Min
;
Zhang, Jing
;
Politis, Argyris
;
Beilsten-Edmands, Victoria
;
Cannone, Giuseppe
;
Graham, Shirley
;
Robinson, Carol V.
;
Spagnolo, Laura
;
White, Malcolm F.
.
MOLECULAR CELL,
2013, 52 (01)
:124-134

Rouillon, Christophe
论文数: 0 引用数: 0
h-index: 0
机构:
Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland

Zhou, Min
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Oxford, Dept Chem, Oxford OX1 3TA, England Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland

Zhang, Jing
论文数: 0 引用数: 0
h-index: 0
机构:
Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland

Politis, Argyris
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Oxford, Dept Chem, Oxford OX1 3TA, England Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland

Beilsten-Edmands, Victoria
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Oxford, Dept Chem, Oxford OX1 3TA, England Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland

Cannone, Giuseppe
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Edinburgh, Inst Struct Mol Biol, Edinburgh EH9 3JR, Midlothian, Scotland
Univ Edinburgh, Ctr Sci Extreme Condit, Edinburgh EH9 3JR, Midlothian, Scotland Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland

Graham, Shirley
论文数: 0 引用数: 0
h-index: 0
机构:
Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland

Robinson, Carol V.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Oxford, Dept Chem, Oxford OX1 3TA, England Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland

Spagnolo, Laura
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Edinburgh, Inst Struct Mol Biol, Edinburgh EH9 3JR, Midlothian, Scotland
Univ Edinburgh, Ctr Sci Extreme Condit, Edinburgh EH9 3JR, Midlothian, Scotland Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland

White, Malcolm F.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland Univ St Andrews, St Andrews KY16 9ST, Fife, Scotland