Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata

被引:232
作者
Rach, J. [1 ]
DeSalle, R. [2 ]
Sarkar, I. N. [3 ]
Schierwater, B. [1 ,2 ]
Hadrys, H. [1 ,4 ]
机构
[1] ITZ, Ecol & Evolut, TiHo Hannover, D-30559 Hannover, Germany
[2] Amer Museum Nat Hist, Div Invertebrate Zool, New York, NY 10024 USA
[3] Marine Biol Lab, MBLWHOI Lib, Woods Hole, MA 02543 USA
[4] Yale Univ, Dept Ecol & Evolut Biol, New Haven, CT 06520 USA
关键词
character-based DNA barcoding; characteristic attributes organisation system; Odonata; ND1; conservation genetics; biodiversity;
D O I
10.1098/rspb.2007.1290
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
DNA barcoding has become a promising means for identifying organisms of all life stages. Currently, phenetic approaches and tree-building methods have been used to define species boundaries and discover 'cryptic species'. However, a universal threshold of genetic distance values to distinguish taxonomic groups cannot be determined. As an alternative, DNA barcoding approaches can be 'character based', whereby species are identified through the presence or absence of discrete nucleotide substitutions ( character states) within a DNA sequence. We demonstrate the potential of character-based DNA barcodes by analysing 833 odonate specimens from 103 localities belonging to 64 species. A total of 54 species and 22 genera could be discriminated reliably through unique combinations of character states within only one mitochondrial gene region ( NADH dehydrogenase 1). Character-based DNA barcodes were further successfully established at a population level discriminating seven population-specific entities out of a total of 19 populations belonging to three species. Thus, for the first time, DNA barcodes have been found to identify entities below the species level that may constitute separate conservation units or even species units. Our findings suggest that character-based DNA barcoding can be a rapid and reliable means for (i) the assignment of unknown specimens to a taxonomic group, (ii) the exploration of diagnosability of conservation units, and (iii) complementing taxonomic identification systems.
引用
收藏
页码:237 / 247
页数:11
相关论文
共 43 条
[1]   DNA barcodes for biosecurity: invasive species identification [J].
Armstrong, KF ;
Ball, SL .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1462) :1813-1823
[2]   Molecular phylogenetic analysis of the dragonfly genera Libellula, Ladona, and Plathemis (Odonata: Libellulidae) based on mitochondrial cytochrome oxidase I and 16S rRNA sequence data [J].
Artiss, T ;
Schultz, TR ;
Polhemus, DA ;
Simon, C .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2001, 18 (03) :348-361
[3]   Lessons from leeches: a call for DNA barcoding in the lab [J].
Bely, Alexandra E. ;
Weisblat, David A. .
EVOLUTION & DEVELOPMENT, 2006, 8 (06) :491-501
[4]   Defining operational taxonomic units using DNA barcode data [J].
Blaxter, M ;
Mann, J ;
Chapman, T ;
Thomas, F ;
Whitton, C ;
Floyd, R ;
Abebe, E .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1462) :1935-1943
[5]  
Corbet P. S., 1999, Dragonflies: behaviour and ecology of Odonata.
[6]   The unholy trinity: taxonomy, species delimitation and DNA barcoding [J].
DeSalle, R ;
Egan, MG ;
Siddall, M .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1462) :1905-1916
[7]   Species discovery versus species identification in DNA barcoding efforts: Response to Rubinoff [J].
DeSalle, Rob .
CONSERVATION BIOLOGY, 2006, 20 (05) :1545-1547
[8]  
Dijkstra Klaas-Douwe B., 2007, International Journal of Odonatology, V10, P31
[9]  
DUMONT H J, 1978, Odonatologica, V7, P123
[10]   DRAGONFLIES (INSECTA, ODONATA) FROM THE RED-SEA HILLS AND THE MAIN NILE IN SUDAN [J].
DUMONT, HJ ;
MARTENS, K .
HYDROBIOLOGIA, 1984, 110 (MAR) :181-190