Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata

被引:232
作者
Rach, J. [1 ]
DeSalle, R. [2 ]
Sarkar, I. N. [3 ]
Schierwater, B. [1 ,2 ]
Hadrys, H. [1 ,4 ]
机构
[1] ITZ, Ecol & Evolut, TiHo Hannover, D-30559 Hannover, Germany
[2] Amer Museum Nat Hist, Div Invertebrate Zool, New York, NY 10024 USA
[3] Marine Biol Lab, MBLWHOI Lib, Woods Hole, MA 02543 USA
[4] Yale Univ, Dept Ecol & Evolut Biol, New Haven, CT 06520 USA
关键词
character-based DNA barcoding; characteristic attributes organisation system; Odonata; ND1; conservation genetics; biodiversity;
D O I
10.1098/rspb.2007.1290
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
DNA barcoding has become a promising means for identifying organisms of all life stages. Currently, phenetic approaches and tree-building methods have been used to define species boundaries and discover 'cryptic species'. However, a universal threshold of genetic distance values to distinguish taxonomic groups cannot be determined. As an alternative, DNA barcoding approaches can be 'character based', whereby species are identified through the presence or absence of discrete nucleotide substitutions ( character states) within a DNA sequence. We demonstrate the potential of character-based DNA barcodes by analysing 833 odonate specimens from 103 localities belonging to 64 species. A total of 54 species and 22 genera could be discriminated reliably through unique combinations of character states within only one mitochondrial gene region ( NADH dehydrogenase 1). Character-based DNA barcodes were further successfully established at a population level discriminating seven population-specific entities out of a total of 19 populations belonging to three species. Thus, for the first time, DNA barcodes have been found to identify entities below the species level that may constitute separate conservation units or even species units. Our findings suggest that character-based DNA barcoding can be a rapid and reliable means for (i) the assignment of unknown specimens to a taxonomic group, (ii) the exploration of diagnosability of conservation units, and (iii) complementing taxonomic identification systems.
引用
收藏
页码:237 / 247
页数:11
相关论文
共 43 条
[21]   Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding [J].
Janzen, DH ;
Hajibabaei, M ;
Burns, JM ;
Hallwachs, W ;
Remigio, E ;
Hebert, PDN .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1462) :1835-1845
[22]  
KIPLING WW, 2004, CLADISTICS, V20, P47, DOI DOI 10.1111/J.1096-0031.2003.00008.X
[23]   Use of DNA barcodes to identify flowering plants [J].
Kress, WJ ;
Wurdack, KJ ;
Zimmer, EA ;
Weigt, LA ;
Janzen, DH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (23) :8369-8374
[24]   Relationship between morphological taxonomy and molecular divergence within Crustacea:: Proposal of a molecular threshold to help species delimitation [J].
Lefebure, T. ;
Douady, C. J. ;
Gouy, M. ;
Gibert, J. .
MOLECULAR PHYLOGENETICS AND EVOLUTION, 2006, 40 (02) :435-447
[25]  
Maddison DR., 2000, MACCLADE 4 ANAL PHYL
[26]   Reverse taxonomy: an approach towards determining the diversity of meiobenthic organisms based on ribosomal RNA signature sequences [J].
Markmann, M ;
Tautz, D .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1462) :1917-1924
[27]   DNA barcoding: Error rates based on comprehensive sampling [J].
Meyer, CP ;
Paulay, G .
PLOS BIOLOGY, 2005, 3 (12) :2229-2238
[28]   DNA-based species delineation in tropical beetles using mitochondrial and nuclear markers [J].
Monaghan, MT ;
Balke, M ;
Gregory, TR ;
Vogler, AP .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2005, 360 (1462) :1925-1933
[29]  
Paulson Dennis, 2006, P79
[30]   A genomic perspective on the shortcomings of mitochondrial DNA for "barcoding" identification [J].
Rubinoff, Daniel ;
Cameron, Stephen ;
Will, Kipling .
JOURNAL OF HEREDITY, 2006, 97 (06) :581-594