σ-Hole Interactions of Covalently-Bonded Nitrogen, Phosphorus and Arsenic: A Survey of Crystal Structures

被引:143
作者
Politzer, Peter [1 ,2 ]
Murray, Jane S. [1 ,2 ]
Janjic, Goran V. [3 ]
Zaric, Snezana D. [4 ,5 ]
机构
[1] Univ New Orleans, Dept Chem, New Orleans, LA 70148 USA
[2] CleveTheoComp, Cleveland, OH 44113 USA
[3] Univ Belgrade, ICTM, Belgrade 11000, Serbia
[4] Univ Belgrade, Dept Chem, Belgrade 11000, Serbia
[5] Texas A&M Univ, Dept Chem, Doha, Qatar
关键词
sigma-hole interactions; trivalent nitrogen; phosphorus and arsenic; survey of crystal structures; electrostatic potentials; SURFACE ELECTROSTATIC POTENTIALS; NONBONDED ATOMIC CONTACTS; LOCAL IONIZATION ENERGIES; HYDROGEN-BOND; INTRAMOLECULAR COORDINATION; DIRECTIONAL PREFERENCES; MOLECULAR-STRUCTURES; DIVALENT SULFUR; CHALCOGEN BOND; HALOGEN BOND;
D O I
10.3390/cryst4010012
中图分类号
O7 [晶体学];
学科分类号
0702 ; 070205 ; 0703 ; 080501 ;
摘要
Covalently-bonded atoms of Groups IV-VII tend to have anisotropic charge distributions, the electronic densities being less on the extensions of the bonds (sigma-holes) than in the intervening regions. These sigma-holes often give rise to positive electrostatic potentials through which the atom can interact attractively and highly directionally with negative sites (e.g., lone pairs, pi electrons and anions), forming noncovalent complexes. For Group VII this is called. halogen bonding. and has been widely studied both computationally and experimentally. For Groups IV-VI, it is only since 2007 that positive sigma-holes have been recognized as explaining many noncovalent interactions that have in some instances long been known experimentally. There is considerable experimental evidence for such interactions involving groups IV and VI, particularly in the form of surveys of crystal structures. However we have found less extensive evidence for Group V. Accordingly we have now conducted a survey of the Cambridge Structural Database for crystalline close contacts of trivalent nitrogen, phosphorus and arsenic with six different types of electronegative atoms in neighboring molecules. We have found numerous close contacts that fit the criteria for sigma-hole interactions. Some of these are discussed in detail; in two instances, computed molecular electrostatic potentials are presented.
引用
收藏
页码:12 / 31
页数:20
相关论文
共 89 条
[81]   EXPERIMENTAL ELECTRON-DENSITY DISTRIBUTION OF MOLECULAR CHLORINE [J].
STEVENS, ED .
MOLECULAR PHYSICS, 1979, 37 (01) :27-45
[82]   Nature of intramolecular interactions in hypercoordinate C-substituted 1,2-dicarba-closo-dodecaboranes with short P•••P distances [J].
Sundberg, Markku R. ;
Uggla, Rolf ;
Vinas, Clara ;
Teixidor, Francesc ;
Paavola, Sari ;
Kivekas, Raikko .
INORGANIC CHEMISTRY COMMUNICATIONS, 2007, 10 (06) :713-716
[83]   Investigation of the nature of the methionine-π-interaction in β-hairpin peptide model systems [J].
Tatko, CD ;
Waters, ML .
PROTEIN SCIENCE, 2004, 13 (09) :2515-2522
[84]   Aminoalkylferrocenyldichlorophosphanes:: facile synthesis of versatile chiral starting materials [J].
Tschirschwitz, Steffen ;
Loennecke, Peter ;
Hey-Hawkins, Evamarie .
DALTON TRANSACTIONS, 2007, (14) :1377-1382
[85]   TOPOLOGICAL DEFINITION OF CRYSTAL-STRUCTURE - DETERMINATION OF THE BONDED INTERACTIONS IN SOLID MOLECULAR CHLORINE [J].
TSIRELSON, VG ;
ZOU, PF ;
TANG, TH ;
BADER, RFW .
ACTA CRYSTALLOGRAPHICA SECTION A, 1995, 51 :143-153
[86]   SIDE-CHAIN INTERACTIONS BETWEEN SULFUR-CONTAINING AMINO-ACIDS AND PHENYLALANINE IN ALPHA-HELICES [J].
VIGUERA, AR ;
SERRANO, L .
BIOCHEMISTRY, 1995, 34 (27) :8771-8779
[87]   SYNTHESIS AND X-RAY STRUCTURE OF BINAPHTHYL-BASED MACROCYCLIC DIPHOSPHANES AND THEIR NI(II) AND PD(II) COMPLEXES [J].
WIDHALM, M ;
KRATKY, C .
CHEMISCHE BERICHTE-RECUEIL, 1992, 125 (03) :679-689
[88]   The bifurcate chalcogen bond: Some theoretical observations [J].
Zhang, Yu ;
Wang, Weizhou .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2009, 916 (1-3) :135-138
[89]   Theoretical Investigations on the Weak Nonbonded C=S•••CH2 Interactions: Chalcogen-Bonded Complexes With Singlet Carbene as an Electron Donor [J].
Zhao, Qiang ;
Feng, Dacheng ;
Sun, Youmin ;
Hao, Jingcheng ;
Cai, Zhengting .
INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2011, 111 (14) :3881-3887