BioMart Central Portal: an open database network for the biological community

被引：106

作者：

Guberman, Jonathan M. ^{[1
]}

Ai, J. ^{[2
,3
]}

Arnaiz, O. ^{[4
]}

Baran, Joachim ^{[1
]}

Blake, Andrew ^{[5
]}

Baldock, Richard ^{[6
]}

Chelala, Claude ^{[7
]}

Croft, David ^{[8
]}

Cros, Anthony ^{[1
]}

Cutts, Rosalind J. ^{[7
]}

Di Genova, A. ^{[9
,10
]}

Forbes, Simon ^{[11
]}

Fujisawa, T. ^{[12
]}

Gadaleta, E. ^{[7
]}

Goodstein, D. M. ^{[13
,14
]}

Gundem, Gunes ^{[15
]}

Haggarty, Bernard ^{[6
]}

Haider, Syed ^{[16
]}

Hall, Matthew ^{[17
]}

Harris, Todd ^{[18
]}

Haw, Robin ^{[1
]}

Hu, S. ^{[2
,3
]}

Hubbard, Simon ^{[19
]}

Hsu, Jack ^{[1
]}

Iyer, Vivek ^{[20
]}

Jones, Philip ^{[8
]}

Katayama, Toshiaki ^{[21
]}

Kinsella, R. ^{[8
]}

Kong, Lei ^{[22
]}

Lawson, Daniel ^{[23
]}

Liang, Yong ^{[1
]}

Lopez-Bigas, Nuria ^{[15
]}

Luo, J. ^{[8
]}

Lush, Michael ^{[24
]}

Mason, Jeremy ^{[17
]}

Moreews, Francois ^{[25
]}

Ndegwa, Nelson ^{[8
]}

Oakley, Darren ^{[20
]}

Perez-Llamas, Christian ^{[15
]}

Primig, Michael ^{[26
]}

Rivkin, Elena ^{[1
]}

Rosanoff, S. ^{[8
]}

Shepherd, Rebecca ^{[11
]}

Simon, Reinhard ^{[27
]}

Skarnes, B. ^{[20
]}

Smedley, Damian ^{[8
]}

Sperling, Linda ^{[4
]}

Spooner, William ^{[18
,28
]}

Stevenson, Peter ^{[6
]}

Stone, Kevin ^{[17
]}

机构：

[1] Ontario Inst Canc Res, Toronto, ON M5G 0A3, Canada

[2] Univ Calif Los Angeles, Sch Dent, Los Angeles, CA 90095 USA

[3] Univ Calif Los Angeles, Dent Res Inst, Los Angeles, CA 90095 USA

[4] CNRS, Ctr Genet Mol UPR3404, F-75794 Paris 16, France

[5] MRC Harwell, Didcot OX11 0RD, Oxon, England

[6] Western Gen Hosp, MRC Human Genet Unit, Inst Genet & Mol Med, Edinburgh EH4 2XU, Midlothian, Scotland

[7] Queen Mary Univ London, Ctr Mol Oncol & Imaging, Barts Canc Inst, London E1 2AD, England

[8] EMBL European Bioinformat Inst, Cambridge CB10 1SD, England

[9] Univ Chile, Ctr Math Modeling, Blanco Enclada, Chile

[10] Univ Chile, Ctr Genome Regulat, Blanco Enclada, Chile

[11] Wellcome Trust Sanger Inst, Canc Genome Project, Cambridge CB10 1SA, England

[12] Kasuza DNA Res Inst, Chiba 2920818, Japan

[13] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Genom Div, Berkeley, CA 94720 USA

[14] Joint Genome Inst, Dept Energy, Walnut Creek, CA USA

[15] Univ Pompeu Fabra, Res Unit Biomed Informat, Dept Expt & Hlth Sci, Barcelona, Spain

[16] Univ Cambridge, Comp Lab, Cambridge CB3 0FD, England

[17] Jackson Lab, Mouse Genom Informat Grp, Bar Harbor, ME 04609 USA

[18] Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA

[19] Univ Manchester, Fac Life Sci, Manchester M13 9PL, Lancs, England

[20] Wellcome Trust Sanger Inst, Hinxton CB10 1SD, S Cambs, England

[21] Univ Tokyo, Bunkyo Ku, Tokyo 1130033, Japan

[22] Peking Univ, Ctr Bioinformat, State Key Lab Prot & Plant Gene Res, Coll Life Sci, Beijing 100871, Peoples R China

[23] European Bioinformat Inst, VectorBase, Hinxton CB10 1SD, S Cambs, England

[24] European Bioinformat Inst EMBL EBI, HUGO Gene Nomenclature Comm HGNC, Hinxton CB10 1SD, S Cambs, England

[25] INRA, Sigenae, F-75338 St Gilles, France

[26] Univ Rennes, INSERM, U625, F-35043 Rennes, France

[27] Int Potato Ctr CIP, Lima 1558, Peru

[28] Eagle Genom Ltd, Cambridge CB22 3AT, England

来源：

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION | 2011年

关键词：

IDENTIFICATIONS; GENOMICS; KEGG;

D O I：

10.1093/database/bar041

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

BioMart Central Portal is a first of its kind, community-driven effort to provide unified access to dozens of biological databases spanning genomics, proteomics, model organisms, cancer data, ontology information and more. Anybody can contribute an independently maintained resource to the Central Portal, allowing it to be exposed to and shared with the research community, and linking it with the other resources in the portal. Users can take advantage of the common interface to quickly utilize different sources without learning a new system for each. The system also simplifies cross-database searches that might otherwise require several complicated steps. Several integrated tools streamline common tasks, such as converting between ID formats and retrieving sequences. The combination of a wide variety of databases, an easy-to-use interface, robust programmatic access and the array of tools make Central Portal a one-stop shop for biological data querying. Here, we describe the structure of Central Portal and show example queries to demonstrate its capabilities. Database URL: http://central.biomart.org.

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页数：9

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