Structural genomics: from genes to structures with valuable materials and many questions in between

被引:31
作者
Fox, Brian G. [1 ]
Goulding, Celia [2 ]
Malkowski, Michael G. [3 ]
Stewart, Lance [4 ]
Deacon, Ashley [5 ]
机构
[1] Univ Wisconsin, Ctr Eukaryot Struct Genom, Madison, WI 53706 USA
[2] Univ Calif Los Angeles, Integrated Ctr Struct & Funct Innovat, Inst Mol Biol, Los Angeles, CA 90095 USA
[3] Hauptmann Woodward Med Res Inst, Ctr High Throughput Struct Biol, Buffalo, NY 14203 USA
[4] deCODE Biostruct, Accelerated Technol Ctr Gene 3D Struct, Bainbridge Isl, WA 98110 USA
[5] Stanford Synchrotron Radiat Lab, Joint Ctr Struct Genom, Menlo Pk, CA 94025 USA
关键词
D O I
10.1038/nmeth0208-129
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The Protein Structure Initiative (PSI), funded by the US National Institutes of Health (NIH), provides a framework for the development and systematic evaluation of methods to solve protein structures. Although the PSI and other structural genomics efforts around the world have led to the solution of many new protein structures as well as the development of new methods, methodological bottlenecks still exist and are being addressed in this ' production phase' of PSI.
引用
收藏
页码:129 / 132
页数:4
相关论文
共 41 条
[1]   Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium [J].
Acton, TB ;
Gunsalus, KC ;
Xiao, R ;
Ma, LC ;
Aramini, J ;
Baran, MC ;
Chiang, YW ;
Climent, T ;
Cooper, B ;
Denissova, NG ;
Douglas, SM ;
Everett, JK ;
Ho, CK ;
Macapagal, D ;
Rajan, PK ;
Shastry, R ;
Shih, LY ;
Swapna, GVT ;
Wilson, M ;
Wu, M ;
Gerstein, M ;
Inouye, M ;
Hunt, JF ;
Montelione, GT .
NUCLEAR MAGNETIC RESONANCE OF BIOLOGICAL MACROMOLECULES, PART C, 2005, 394 :210-243
[2]   Microgram-scale protein structure determination by NMR [J].
Aramini, James M. ;
Rossi, Paolo ;
Anklin, Clemens ;
Xiao, Rong ;
Montelione, Gaetano T. .
NATURE METHODS, 2007, 4 (06) :491-493
[3]   Expression, purification and crystallization of native and selenomethionine labeled Mycobacterium tuberculosis FGD1 (Rv0407) using a Mycobacterium smegmatis expression system [J].
Bashiri, Ghader ;
Squire, Christopher J. ;
Baker, Edward N. ;
Moreland, Nicole J. .
PROTEIN EXPRESSION AND PURIFICATION, 2007, 54 (01) :38-44
[4]   Enhanced bacterial protein expression during auto-induction obtained by alteration of lac repressor dosage and medium composition [J].
Blommel, Paul G. ;
Becker, Katie J. ;
Duvnjak, Petar ;
Fox, Brian G. .
BIOTECHNOLOGY PROGRESS, 2007, 23 (03) :585-598
[5]   High efficiency single step production of expression plasmids from cDNA clones using the Flexi Vector cloning system [J].
Blommel, Paul G. ;
Martin, Peter A. ;
Wrobel, Russell L. ;
Steffen, Eric ;
Fox, Brian G. .
PROTEIN EXPRESSION AND PURIFICATION, 2006, 47 (02) :562-570
[6]   Target selection for structural genomics [J].
Brenner, SE .
NATURE STRUCTURAL BIOLOGY, 2000, 7 (Suppl 11) :967-969
[7]   Quality of protein crystal structures [J].
Brown, Eric N. ;
Ramaswamy, S. .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2007, 63 :941-950
[8]   Update on the Pfam5000 strategy for selection of structural genomics targets [J].
Chandonia, J. -M. ;
Brenner, S. E. .
2005 27TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-7, 2005, :751-755
[9]  
Chayen Naomi E, 2007, Methods Mol Biol, V363, P175, DOI 10.1007/978-1-59745-209-0_9
[10]   TargetDB: a target registration database for structural genomics projects [J].
Chen, L ;
Oughtred, R ;
Berman, HM ;
Westbrook, J .
BIOINFORMATICS, 2004, 20 (16) :2860-2862