Predicting optimal lengths of random knots

被引:21
作者
Dobay, A [1 ]
Sottas, PE
Dubochet, J
Stasiak, A
机构
[1] Univ Lausanne, Lab Ultrastruct Anal, CH-1015 Lausanne, Switzerland
[2] EPFL DI, Ctr Neuromimet Syst, Swiss Fed Inst Technol, CH-1015 Lausanne, Switzerland
关键词
knots; polymers; scaling laws; DNA; random walks; biophysics;
D O I
10.1023/A:1010921318473
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
In a thermally fluctuating long linear polymeric chain in a solution, the ends, from time to time, approach each other. At such an instance, the chain can be regarded as closed and thus will form a knot or rather a virtual knot. Several earlier studies of random knotting demonstrated that simpler knots show a higher occurrence for shorter random walks than do more complex knots. However, up to now there have been no rules that could be used to predict the optimal length of a random walk, i.e. the length for which a given knot reaches its highest occurrence. Using numerical simulations, we show here that a power law accurately describes the relation between the optimal lengths of random walks leading to the formation of different knots and the previously characterized lengths of ideal knots of a corresponding type.
引用
收藏
页码:239 / 247
页数:9
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