Cytogenetic localization of 44 new coding sequences in the horse

被引:22
作者
Godard, S [1 ]
Vaiman, A [1 ]
Schibler, L [1 ]
Mariat, D [1 ]
Vaiman, D [1 ]
Cribiu, EP [1 ]
Guérin, G [1 ]
机构
[1] INRA, Dept Denet Anim, Lab Genet Biochim & Cytogenet, Ctr Rech Jouy, F-78352 Jouy En Josas, France
关键词
D O I
10.1007/s003350010206
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The purpose of this study was to increase the number of genes assigned by in situ hybridization to equine chromosomes and thus the number of links for comparative mapping with other species. Forty-four new sequences were added to the horse cytogenetic map by FISH mapping of BAC clones containing genes (35) or ESTs (9). Three approaches were developed: use of horst BAC clones screened with (i) horse EST primers, (ii) interspecific consensus intraexonic primers, and (iii) use of goat BAC containing genes previously localized on goat chromosomes. Present data suggest that the second approach is the most promising. A total of 46 segments containing one or several genes could be compared, among which 40 loci could be included in 16 synteny groups between human and horse, displaying one ordered segment and several breaking points along chromosomes. All single BAC localizations confirm the most recent mapping data. Twenty-six out of 31 chromosomes now contain a gene mapped by in situ hybridization, and 14 new arm-to-arm segment homologies were revealed.
引用
收藏
页码:1093 / 1097
页数:5
相关论文
共 34 条
[1]   Comparative genome organization of vertebrates [J].
Andersson, L ;
Archibald, A ;
Ashburner, M ;
Audun, S ;
Barendse, W ;
Bitgood, J ;
Bottema, C ;
Broad, T ;
Brown, S ;
Burt, D ;
Charlier, C ;
Copeland, N ;
Davis, S ;
Davisson, M ;
Edwards, J ;
Eggen, A ;
Elgar, G ;
Eppig, JT ;
Franklin, I ;
Grewe, P ;
Gill, T ;
Graves, JAM ;
Hawken, R ;
Hetzel, J ;
Hilyard, A ;
Jacob, H ;
Jaswinska, L ;
Jenkins, N ;
Kunz, H ;
Levan, G ;
Lie, O ;
Lyons, L ;
Maccarone, P ;
Mellersh, C ;
Montgomery, G ;
Moore, S ;
Moran, C ;
Morizot, D ;
Neff, M ;
Nicholas, F ;
OBrien, S ;
Parsons, Y ;
Peters, J ;
Postlethwait, J ;
Raymond, M ;
Rothschild, M ;
Schook, L ;
Sugimoto, Y ;
Szpirer, C ;
Tate, M .
MAMMALIAN GENOME, 1996, 7 (10) :717-734
[2]   ASSIGNMENT OF BOVINE SYNTENY GROUP-U27 AND GROUP-U8 TO R-BANDED CHROMOSOME-12 AND CHROMOSOME-27, RESPECTIVELY [J].
BAHRIDARWICH, I ;
VAIMAN, D ;
OLSAKER, I ;
OUSTRY, A ;
CRIBIU, EP .
HEREDITAS, 1994, 120 (03) :261-265
[3]   Linkage of the gene for equine combined immunodeficiency disease to microsatellite markers HTG8 and HTG4; synteny and FISH mapping to ECA9 [J].
Bailey, E ;
Reid, RC ;
Skow, LC ;
Mathiason, K ;
Lear, TL ;
McGuire, TC .
ANIMAL GENETICS, 1997, 28 (04) :268-273
[4]  
BAILEY E, 1995, ANIM GENET, V26, P177, DOI 10.1111/j.1365-2052.1995.tb03158.x
[5]   International system for cytogenetic nomenclature of the domestic horse - Report of the Third International Committee for the Standardization of the Domestic Horse Karyotype, Davis, CA, USA, 1996 [J].
Bowling, AT ;
Breen, M ;
Chowdhary, BP ;
Hirota, K ;
Lear, T ;
Millon, LV ;
deLeon, FAP ;
Raudsepp, T ;
Stranzinger, G .
CHROMOSOME RESEARCH, 1997, 5 (07) :433-443
[6]   Comparative mapping of 18 equine type I genes assigned by somatic cell hybrid analysis [J].
Caetano, AR ;
Pomp, D ;
Murray, JD ;
Bowling, AT .
MAMMALIAN GENOME, 1999, 10 (03) :271-276
[7]   A comparative gene map of the horse (Equus caballus) [J].
Caetano, AR ;
Shiue, YL ;
Lyons, LA ;
O'Brien, SJ ;
Laughlin, TF ;
Bowling, AT ;
Murray, JD .
GENOME RESEARCH, 1999, 9 (12) :1239-1249
[8]   Zoo-FISH with microdissected arm specific paints for HSA2, 5, 6, 16, and 19 refines known homology with pig and horse chromosomes [J].
Chaudhary, R ;
Raudsepp, T ;
Guan, XY ;
Zhang, HG ;
Chowdhary, BP .
MAMMALIAN GENOME, 1998, 9 (01) :44-49
[9]   Emerging patterns of comparative genome organization in some mammalian species as revealed by Zoo-FISH [J].
Chowdhary, BP ;
Raudsepp, T ;
Frönicke, L ;
Scherthan, H .
GENOME RESEARCH, 1998, 8 (06) :577-589
[10]  
CRIBIU EP, 1989, ANN GENET-PARIS, V32, P200