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Efficient primer strand extension beyond oxadiazole carboxamide nucleobases
被引:19
作者
:
Adelfinskaya, O
论文数:
0
引用数:
0
h-index:
0
机构:
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Adelfinskaya, O
Nashine, VC
论文数:
0
引用数:
0
h-index:
0
机构:
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Nashine, VC
Bergstrom, DE
论文数:
0
引用数:
0
h-index:
0
机构:
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Bergstrom, DE
Davisson, VJ
论文数:
0
引用数:
0
h-index:
0
机构:
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Davisson, VJ
[
1
]
机构
:
[1]
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
[2]
Walther Canc Inst, Indianapolis, IN 46208 USA
来源
:
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
|
2005年
/ 127卷
/ 46期
关键词
:
D O I
:
10.1021/ja054226j
中图分类号
:
O6 [化学];
学科分类号
:
0703 ;
摘要
:
Two oxadiazole carboxamide deoxyribonucleoside analogues are described that can be incorporated and efficiently extended by Taq DNA polymerase. The primer strand extension beyond oxadiazole nucleoside analogues occurs at rates similar to the values observed for the canonical Watson-Crick base pairs irrespective of the template nucleobase. These distinctive chemical effects in DNA polymerase extensions are attributed to the smaller size and unique electronic properties of the oxadiazole nucleobase. Copyright © 2005 American Chemical Society.
引用
收藏
页码:16000 / 16001
页数:2
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Kunkel, TA
Ellenberger, T
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0
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0
h-index:
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Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
Ellenberger, T
[J].
EMBO JOURNAL,
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Analysis of single nucleotide incorporation reactions by capillary electrophoresis
Hanes, JW
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Univ Texas, Dept Chem & Biochem, Austin, TX 78712 USA
Univ Texas, Dept Chem & Biochem, Austin, TX 78712 USA
Hanes, JW
Johnson, KA
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引用数:
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h-index:
0
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Univ Texas, Dept Chem & Biochem, Austin, TX 78712 USA
Univ Texas, Dept Chem & Biochem, Austin, TX 78712 USA
Johnson, KA
[J].
ANALYTICAL BIOCHEMISTRY,
2005,
340
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[4]
Beyond A, C, G and T: augmenting nature's alphabet
Henry, AA
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Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
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2003,
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: 727
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733
[5]
Determinants of unnatural nucleobase stability and polymerase recognition
Henry, AA
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0
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Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Henry, AA
Yu, CZ
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Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
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Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
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[J].
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Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
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Matsuda, S
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Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Matsuda, S
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Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
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[J].
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Template directed incorporation of nucleotide mixtures using azole-nucleobase analogs
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Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
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Paul, N
Bergstrom, DE
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Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Bergstrom, DE
Davisson, VJ
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Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Davisson, VJ
[J].
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Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase
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Taylor, JS
Beese, LS
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引用数:
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h-index:
0
机构:
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Beese, LS
[J].
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2003,
100
(07)
: 3895
-
3900
←
1
2
3
→
共 22 条
[1]
ADELFINSKAYA O, IN PRESS NUCLEOSIDES
[2]
Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase
Brieba, LG
论文数:
0
引用数:
0
h-index:
0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
Brieba, LG
Eichman, BF
论文数:
0
引用数:
0
h-index:
0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
Eichman, BF
Kokoska, RJ
论文数:
0
引用数:
0
h-index:
0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
Kokoska, RJ
Doublié, S
论文数:
0
引用数:
0
h-index:
0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
Doublié, S
Kunkel, TA
论文数:
0
引用数:
0
h-index:
0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
Kunkel, TA
Ellenberger, T
论文数:
0
引用数:
0
h-index:
0
机构:
Harvard Univ, Sch Med, Dept Biol Chem & Mol Pharmacol, Boston, MA 02115 USA
Ellenberger, T
[J].
EMBO JOURNAL,
2004,
23
(17)
: 3452
-
3461
[3]
Analysis of single nucleotide incorporation reactions by capillary electrophoresis
Hanes, JW
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Texas, Dept Chem & Biochem, Austin, TX 78712 USA
Univ Texas, Dept Chem & Biochem, Austin, TX 78712 USA
Hanes, JW
Johnson, KA
论文数:
0
引用数:
0
h-index:
0
机构:
Univ Texas, Dept Chem & Biochem, Austin, TX 78712 USA
Univ Texas, Dept Chem & Biochem, Austin, TX 78712 USA
Johnson, KA
[J].
ANALYTICAL BIOCHEMISTRY,
2005,
340
(01)
: 35
-
40
[4]
Beyond A, C, G and T: augmenting nature's alphabet
Henry, AA
论文数:
0
引用数:
0
h-index:
0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Henry, AA
Romesberg, FE
论文数:
0
引用数:
0
h-index:
0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Romesberg, FE
[J].
CURRENT OPINION IN CHEMICAL BIOLOGY,
2003,
7
(06)
: 727
-
733
[5]
Determinants of unnatural nucleobase stability and polymerase recognition
Henry, AA
论文数:
0
引用数:
0
h-index:
0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Henry, AA
Yu, CZ
论文数:
0
引用数:
0
h-index:
0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Yu, CZ
Romesberg, FE
论文数:
0
引用数:
0
h-index:
0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Romesberg, FE
[J].
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2003,
125
(32)
: 9638
-
9646
[6]
Efforts to expand the genetic alphabet: Identification of a replicable unnatural DNA self-pair
Henry, AA
论文数:
0
引用数:
0
h-index:
0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Henry, AA
Olsen, AG
论文数:
0
引用数:
0
h-index:
0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Olsen, AG
Matsuda, S
论文数:
0
引用数:
0
h-index:
0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Matsuda, S
Yu, CZ
论文数:
0
引用数:
0
h-index:
0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Yu, CZ
Geierstanger, BH
论文数:
0
引用数:
0
h-index:
0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Geierstanger, BH
Romesberg, FE
论文数:
0
引用数:
0
h-index:
0
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Romesberg, FE
[J].
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY,
2004,
126
(22)
: 6923
-
6931
[7]
Template directed incorporation of nucleotide mixtures using azole-nucleobase analogs
Hoops, GC
论文数:
0
引用数:
0
h-index:
0
机构:
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Hoops, GC
Zhang, PM
论文数:
0
引用数:
0
h-index:
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机构:
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Zhang, PM
Johnson, WT
论文数:
0
引用数:
0
h-index:
0
机构:
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Johnson, WT
Paul, N
论文数:
0
引用数:
0
h-index:
0
机构:
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Paul, N
Bergstrom, DE
论文数:
0
引用数:
0
h-index:
0
机构:
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Bergstrom, DE
Davisson, VJ
论文数:
0
引用数:
0
h-index:
0
机构:
Purdue Univ, Dept Med Chem & Mol Pharmacol, W Lafayette, IN 47907 USA
Davisson, VJ
[J].
NUCLEIC ACIDS RESEARCH,
1997,
25
(24)
: 4866
-
4871
[8]
Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase
Hsu, GW
论文数:
0
引用数:
0
h-index:
0
机构:
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Hsu, GW
Ober, M
论文数:
0
引用数:
0
h-index:
0
机构:
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Ober, M
Carell, T
论文数:
0
引用数:
0
h-index:
0
机构:
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Carell, T
Beese, LS
论文数:
0
引用数:
0
h-index:
0
机构:
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Beese, LS
[J].
NATURE,
2004,
431
(7005)
: 217
-
221
[9]
Structures of mismatch replication errors observed in a DNA polymerase
Johnson, SJ
论文数:
0
引用数:
0
h-index:
0
机构:
Duke Univ, Ctr Med, Dept Biochem, Durham, NC 27710 USA
Duke Univ, Ctr Med, Dept Biochem, Durham, NC 27710 USA
Johnson, SJ
Beese, LS
论文数:
0
引用数:
0
h-index:
0
机构:
Duke Univ, Ctr Med, Dept Biochem, Durham, NC 27710 USA
Duke Univ, Ctr Med, Dept Biochem, Durham, NC 27710 USA
Beese, LS
[J].
CELL,
2004,
116
(06)
: 803
-
816
[10]
Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations
Johnson, SJ
论文数:
0
引用数:
0
h-index:
0
机构:
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Johnson, SJ
Taylor, JS
论文数:
0
引用数:
0
h-index:
0
机构:
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Taylor, JS
Beese, LS
论文数:
0
引用数:
0
h-index:
0
机构:
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Duke Univ, Med Ctr, Dept Biochem, Durham, NC 27710 USA
Beese, LS
[J].
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2003,
100
(07)
: 3895
-
3900
←
1
2
3
→