The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants

被引：646

作者：

Banks, Jo Ann ^{[1
]}

Nishiyama, Tomoaki ^{[2
,3
]}

Hasebe, Mitsuyasu ^{[3
,4
,5
]}

Bowman, John L. ^{[6
,7
]}

Gribskov, Michael ^{[8
]}

dePamphilis, Claude ^{[9
,10
,11
,12
]}

Albert, Victor A. ^{[13
]}

Aono, Naoki ^{[4
]}

Aoyama, Tsuyoshi ^{[4
,5
]}

Ambrose, Barbara A. ^{[14
]}

Ashton, Neil W. ^{[15
]}

Axtell, Michael J. ^{[9
,10
]}

Barker, Elizabeth ^{[15
]}

Barker, Michael S. ^{[16
]}

Bennetzen, Jeffrey L. ^{[17
]}

Bonawitz, Nicholas D. ^{[18
]}

Chapple, Clint ^{[18
]}

Cheng, Chaoyang ^{[3
]}

Correa, Luiz Gustavo Guedes ^{[19
]}

Dacre, Michael ^{[20
]}

DeBarry, Jeremy ^{[17
]}

Dreyer, Ingo ^{[21
]}

Elias, Marek ^{[22
,23
]}

Engstrom, Eric M. ^{[24
]}

Estelle, Mark ^{[25
]}

Feng, Liang ^{[26
]}

Finet, Cedric ^{[27
]}

Floyd, Sandra K. ^{[6
]}

Frommer, Wolf B. ^{[28
]}

Fujita, Tomomichi ^{[29
]}

Gramzow, Lydia ^{[30
]}

Gutensohn, Michael ^{[31
,32
]}

Harholt, Jesper ^{[33
]}

Hattori, Mitsuru ^{[34
,35
]}

Heyl, Alexander ^{[36
]}

Hirai, Tadayoshi ^{[3
,37
]}

Hiwatashi, Yuji ^{[4
,5
]}

Ishikawa, Masaki ^{[3
]}

Iwata, Mineko ^{[3
]}

Karol, Kenneth G. ^{[14
]}

Koehler, Barbara ^{[19
]}

Kolukisaoglu, Uener ^{[38
,39
]}

Kubo, Minoru ^{[3
]}

Kurata, Tetsuya ^{[3
,40
]}

Lalonde, Sylvie ^{[28
]}

Li, Kejie ^{[8
]}

Li, Ying ^{[8
,41
]}

Litt, Amy ^{[14
]}

Lyons, Eric ^{[42
]}

Manning, Gerard ^{[20
]}

机构：

[1] Purdue Univ, Dept Bot & Plant Pathol, W Lafayette, IN 47907 USA

[2] Kanazawa Univ, Adv Sci Res Ctr, Kanazawa, Ishikawa 9200934, Japan

[3] Japan Sci & Technol Agcy, ERATO, Okazaki, Aichi 4448585, Japan

[4] Natl Inst Nat Sci, Natl Inst Basic Biol, Okazaki, Aichi 4448585, Japan

[5] Grad Univ Adv Studies, Sch Life Sci, Dept Basic Sci, Okazaki, Aichi 4448585, Japan

[6] Monash Univ, Sch Biol Sci, Melbourne, Vic 3800, Australia

[7] Univ Calif Davis, Plant Biol Sect, Davis, CA 95616 USA

[8] Purdue Univ, Dept Biol Sci, W Lafayette, IN 47907 USA

[9] Penn State Univ, Dept Biol, University Pk, PA 16802 USA

[10] Penn State Univ, Huck Inst Life Sci, University Pk, PA 16802 USA

[11] Penn State Univ, Grad Program Plant Biol, University Pk, PA 16802 USA

[12] Penn State Univ, Inst Mol Evolutionary Genet, University Pk, PA 16802 USA

[13] SUNY Buffalo, Dept Biol Sci, Buffalo, NY 14260 USA

[14] New York Bot Garden, Bronx, NY 10458 USA

[15] Univ Regina, Dept Biol, Regina, SK S4S 0A2, Canada

[16] Univ Arizona, Dept Ecol & Evolutionary Biol, Tucson, AZ 85721 USA

[17] Univ Georgia, Dept Genet, Athens, GA 30602 USA

[18] Purdue Univ, Dept Biochem, W Lafayette, IN 47907 USA

[19] Univ Potsdam, Dept Mol Biol, D-14476 Potsdam, Germany

[20] Salk Inst Biol Studies, Razavi Newman Ctr Bioinformat, La Jolla, CA 92037 USA

[21] Univ Potsdam, Heisenberg Grp Biophys & Mol Plant Biol, D-14476 Potsdam, Germany

[22] Charles Univ Prague, Dept Bot, Fac Sci, Prague 12801 2, Czech Republic

[23] Univ Prague, Fac Sci, Ostrava 71000, Czech Republic

[24] Coll William & Mary, Dept Biol, Williamsburg, VA 23187 USA

[25] Univ Calif San Diego, Sect Cell & Dev Biol, La Jolla, CA 92093 USA

[26] Univ Georgia, Inst Bioinformat, Athens, GA 30602 USA

[27] Ecole Normale Super Lyon, Lab Reprod & Dev Plantes, F-69364 Lyon, France

[28] Carnegie Inst Sci, Dept Plant Biol, Stanford, CA 94305 USA

[29] Hokkaido Univ, Fac Sci, Sapporo, Hokkaido 0600810, Japan

[30] Univ Jena, Dept Genet, D-07743 Jena, Germany

[31] Purdue Univ, Dept Hort & Landscape Architecture, W Lafayette, IN 47907 USA

[32] Univ Halle Wittenberg, Inst Biol, D-06120 Halle, Germany

[33] Univ Copenhagen, Dept Plant Biol & Biotechnol, DK-1871 Frederiksberg C, Denmark

[34] Nagoya Univ, Ctr Gene Res, Nagoya, Aichi 4648602, Japan

[35] Univ Tokyo, Sch Sci, Dept Chem, Bunkyo Ku, Tokyo 1130033, Japan

[36] Free Univ Berlin, Dahlem Ctr Plant Sci, Inst Biol Appl Genet, D-14195 Berlin, Germany

[37] Univ Tsukuba, Ctr Gene Res, Grad Sch Life & Environm Sci, Tsukuba, Ibaraki 3058572, Japan

[38] Univ Rostock, Ctr Life Sci Automat, D-18119 Rostock, Germany

[39] Univ Tubingen, Studiengangskoordinat Nanosci, D-72076 Tubingen, Germany

[40] Nara Inst Sci & Technol, Grad Sch Biol Sci, Plant Global Educ Project, Nara 6300192, Japan

[41] Mayo Clin, Div Biomed Stat & Informat, Rochester, MN 55905 USA

[42] Univ Calif Berkeley, Dept Plant & Microbial Biol, Berkeley, CA 94720 USA

[43] Hokkaido Univ, Grad Sch Life Sci, Sapporo, Hokkaido 0600810, Japan

[44] Rutgers State Univ, Dept Plant Biol & Pathol, Piscataway, NJ 08854 USA

[45] Waksman Inst Microbiol, Piscataway, NJ 08854 USA

[46] Monsanto Co, Genome Anal Ctr, St Louis, MO 63167 USA

[47] Hokkaido Univ, Fac Fisheries Sci, Hakodate, Hokkaido 0418611, Japan

[48] Natl Inst Genet, Mishima, Shizuoka 4118540, Japan

[49] Univ Tokyo, Grad Sch Arts & Sci, Tokyo 1538902, Japan

[50] Bernd Max Planck Inst Mol Plant Physiol, D-14476 Potsdam, Germany

来源：

SCIENCE | 2011年 / 332卷 / 6032期

基金：

美国国家科学基金会; 加拿大自然科学与工程研究理事会; 日本学术振兴会; 澳大利亚研究理事会;

关键词：

SMALL RNAS; MESSENGER-RNAS; ARABIDOPSIS; MOELLENDORFFII; MECHANISM; LAND; PERSPECTIVE; SIRNAS;

D O I：

10.1126/science.1203810

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

Vascular plants appeared similar to 410 million years ago, then diverged into several lineages of which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes. We report here the genome sequence of the lycophyte Selaginella moellendorffii (Selaginella), the first nonseed vascular plant genome reported. By comparing gene content in evolutionarily diverse taxa, we found that the transition from a gametophyte- to a sporophyte-dominated life cycle required far fewer new genes than the transition from a nonseed vascular to a flowering plant, whereas secondary metabolic genes expanded extensively and in parallel in the lycophyte and angiosperm lineages. Selaginella differs in posttranscriptional gene regulation, including small RNA regulation of repetitive elements, an absence of the trans-acting small interfering RNA pathway, and extensive RNA editing of organellar genes.

引用

页码：960 / 963

页数：4

共 25 条

[1] Common functions for diverse small RNAs of land plants [J].