The minimum information about a genome sequence (MIGS) specification

被引：939

作者：

Field, Dawn ^{[1
]}

Garrity, George ^{[2
]}

Gray, Tanya ^{[1
]}

Morrison, Norman ^{[3
,4
]}

Selengut, Jeremy ^{[5
]}

Sterk, Peter ^{[6
]}

Tatusova, Tatiana ^{[7
]}

Thomson, Nicholas ^{[8
]}

Allen, Michael J. ^{[9
]}

Angiuoli, Samuel V. ^{[5
,10
,11
]}

Ashburner, Michael ^{[12
]}

Axelrod, Nelson ^{[5
]}

Baldauf, Sandra ^{[2
,13
]}

Ballard, Stuart ^{[14
]}

Boore, Jeffrey ^{[15
]}

Cochrane, Guy ^{[6
]}

Cole, James ^{[2
]}

Dawyndt, Peter ^{[16
]}

De Vos, Paul ^{[17
,18
]}

dePamphilis, Claude ^{[19
]}

Edwards, Robert ^{[20
,21
]}

Faruque, Nadeem ^{[6
]}

Feldman, Robert ^{[22
]}

Gilbert, Jack ^{[9
]}

Gilna, Paul ^{[23
,24
]}

Gloeckner, Frank Oliver ^{[25
,26
]}

Goldstein, Philip ^{[27
,28
]}

Guralnick, Robert ^{[27
,28
]}

Haft, Dan ^{[5
]}

Hancock, David ^{[4
]}

Hermjakob, Henning ^{[6
]}

Hertz-Fowler, Christiane ^{[8
]}

Hugenholtz, Phil ^{[29
]}

Joint, Ian

Kagan, Leonid ^{[5
]}

Kane, Matthew ^{[30
]}

Kennedy, Jessie ^{[31
]}

Kowalchuk, George ^{[32
]}

Kottmann, Renzo ^{[25
,26
]}

Kolker, Eugene ^{[33
,34
]}

Kravitz, Saul ^{[5
]}

Kyrpides, Nikos ^{[35
]}

Leebens-Mack, Jim ^{[36
]}

Lewis, Suzanna E. ^{[37
]}

Li, Kelvin ^{[5
]}

Lister, Allyson L. ^{[38
,39
]}

Lord, Phillip ^{[38
]}

Maltsev, Natalia ^{[21
]}

Markowitz, Victor ^{[40
]}

Martiny, Jennifer ^{[41
]}

机构：

[1] NERC, Ctr Ecol & Hydrol, Oxford OX1 3SR, England

[2] Michigan State Univ, E Lansing, MI 48824 USA

[3] Univ Manchester, Sch Comp Sci, Manchester M13 9PL, Lancs, England

[4] NERC, Environm Bioinformat Ctr, Oxford Ctr Ecol & Hydrol, Oxford OX1 3SR, England

[5] J Craig Venter Inst, Rockville, MD 20850 USA

[6] European Bioinformat Inst, European Mol Biol Lab Outstat, Cambridge CB10 1SD, England

[7] NIH, Natl Lib Med, Natl Ctr Biotechnol Informat, Bethesda, MD 20894 USA

[8] Sanger Inst, Cambridge CB10 1SA, England

[9] Plymouth Marine Lab, Plymouth PL1 3DH, Devon, England

[10] Univ Maryland, Sch Med, Dept Epidemiol & Prevent Med, Baltimore, MD 21201 USA

[11] Univ Maryland, Sch Med, Inst Genome Sci, Baltimore, MD 21201 USA

[12] Univ Cambridge, Dept Genet, Cambridge CB2 3EH, England

[13] Univ York, Dept Biol, York YO10 5YW, N Yorkshire, England

[14] Univ Cambridge, Dept Earth Sci, Natl Inst Environm eSci, Cambridge CB2 3EQ, England

[15] US DOE, Joint Genome Inst, Walnut Creek, CA 94598 USA

[16] Univ Ghent, Dept Appl Math & Comp Sci, B-9000 Ghent, Belgium

[17] Univ Ghent, Microbiol Lab, B-9000 Ghent, Belgium

[18] Univ Ghent, BCCM LMG Bacteria Collect, B-9000 Ghent, Belgium

[19] Penn State Univ, Mueller Lab 208, University Pk, PA 16802 USA

[20] San Diego State Univ, Dept Comp Sci, San Diego, CA 92182 USA

[21] Argonne Natl Lab, Div Math & Comp Sci, Argonne, IL 60439 USA

[22] SymBio Corp, Menlo Pk, CA 94025 USA

[23] Univ Calif San Diego, Calif Inst Telecommun & Informat Technol, Calit 2, La Jolla, CA 92093 USA

[24] Univ Calif Irvine Partnership, La Jolla, CA 92093 USA

[25] Univ Bremen, D-28359 Bremen, Germany

[26] Max Planck Inst Marine Microbiol, Microbial Genom Grp, D-28359 Bremen, Germany

[27] Univ Colorado, Dept Ecol & Evolutionary Biol, Boulder, CO 80309 USA

[28] Univ Colorado, Nat Hist Museum, Boulder, CO 80309 USA

[29] US DOE, Joint Genome Inst, Microbial Ecol Program, Walnut Creek, CA 94598 USA

[30] Natl Sci Fdn, Arlington, VA 22230 USA

[31] Napier Univ, Sch Comp, Edinburgh EH10 5DT, Midlothian, Scotland

[32] Netherlands Inst Ecol, Dept Terr Microbial Ecol, Ctr Terr Ecol, NL-6666 ZG Heteren, Netherlands

[33] BIATECH Inst, Bothell, WA 98011 USA

[34] Seattle Childrens Hosp Res Inst, Seattle, WA 98101 USA

[35] US DOE, Genome Biol Program, Joint Genome Inst, Walnut Creek, CA 94598 USA

[36] Univ Georgia, Dept Plant Biol, Athens, GA 30602 USA

[37] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA

[38] Newcastle Univ, Sch Comp Sci, Newcastle Upon Tyne NE1 7RU, Tyne & Wear, England

[39] Newcastle Univ, Newcastle Gen Hosp, Henry Wellcome Lab Biogerontol Res Div, CISBAN, Newcastle Upon Tyne NE4 6BE, Tyne & Wear, England

[40] Lawrence Berkeley Natl Lab, Computat Res Div, Biol Data Management & Technol Ctr, Berkeley, CA 94720 USA

[41] Univ Calif Irvine, Dept Ecol & Evolutionary Biol, Irvine, CA 92697 USA

[42] Weatherall Inst Mol Med, Mol Infect Dis Grp, Oxford OX3 9DU, England

[43] Univ Oxford, John Radcliffe Hosp, Dept Paediat, Oxford OX3 9DU, England

[44] Howard Univ, Dept Biol, Washington, DC 20059 USA

[45] Univ New Mexico, Dept Biol, LTER Network Off, Albuquerque, NM 87171 USA

[46] Univ Abertay Dundee, SIMBIOS Ctr, Dundee DD1 1HG, Scotland

[47] Natl Inst Genet, Res Org Informat & Syst, Ctr Informat Biol & DNA Data Bank Japan, Mishima, Shizuoka 4118540, Japan

[48] Tech Univ Denmark, Ctr Biol Sequence Anal, DK-2800 Lyngby, Denmark

[49] Univ Wyoming, Dept Mol Biol, Laramie, WY 82071 USA

[50] Univ Penn, Sch Med, Ctr Bioinformat, Philadelphia, PA 19104 USA

来源：

NATURE BIOTECHNOLOGY | 2008年 / 26卷 / 05期

基金：

英国医学研究理事会; 英国生物技术与生命科学研究理事会; 美国国家科学基金会; 英国自然环境研究理事会;

关键词：

D O I：

10.1038/nbt1360

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 [微生物学]; 0836 [生物工程]; 090102 [作物遗传育种]; 100705 [微生物与生化药学];

摘要：

With the quantity of genomic data increasing at an exponential rate, it is imperative that these data be captured electronically, in a standard format. Standardization activities must proceed within the auspices of open-access and international working bodies. To tackle the issues surrounding the development of better descriptions of genomic investigations, we have formed the Genomic Standards Consortium (GSC). Here, we introduce the minimum information about a genome sequence (MIGS) specification with the intent of promoting participation in its development and discussing the resources that will be required to develop improved mechanisms of metadata capture and exchange. As part of its wider goals, the GSC also supports improving the 'transparency' of the information contained in existing genomic databases.

引用

页码：541 / 547

页数：7

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