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The genome of S-PM2, a "photosynthetic" T4-type bacteriophage that infects marine Synechococcus strains
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作者:

Mann, NH
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Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England

Clokie, MRJ
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机构: Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England

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Cook, A
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机构: Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England

Wilson, WH
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机构: Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England

Wheatley, PJ
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机构: Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England

Letarov, A
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机构: Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England

Krisch, HM
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机构: Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England
机构:
[1] Univ Warwick, Dept Biol Sci, Coventry CV4 7AL, W Midlands, England
[2] Univ Leicester, Dept Phys & Astron, Leicester LE1 7RH, Leics, England
[3] Plymouth Marine Lab, Plymouth, Devon, England
[4] CNRS, Lab Microbiol & Genet Mol, UMR 5100, Toulouse, France
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D O I:
10.1128/JB.187.9.3188-3200.2005
中图分类号:
Q93 [微生物学];
学科分类号:
071005 ;
100705 ;
摘要:
Bacteriophage S-PM2 infects several strains of the abundant and ecologically important marine cyanobacterium Synechococcus. A large lytic phage with an isometric icosahedral head, S-PM2 has a contractile tail and by this criterion is classified as a myovirus (1). The linear, circularly permuted, 196,280-bp double-stranded DNA genome of S-PM2 contains 37.8% G+C residues. It encodes 239 open reading frames (ORFs) and 25 tRNAs. Of these ORFs, 19 appear to encode proteins associated with the cell envelope, including a putative S-layer-associated protein. Twenty additional S-PM2 ORFs have homologues in the genomes of their cyanobacterial hosts. There is a group I self-splicing intron within the gene encoding the D1 protein. A total of 40 ORFs, organized into discrete clusters, encode homologues of T4 proteins involved in virion morphogenesis, nucleotide metabolism, gene regulation, and DNA replication and repair. The S-PM2 genome encodes a few surprisingly large (e.g., 3,779 amino acids) ORFs of unknown function. Our analysis of the S-PM2 genome suggests that many of the unknown S-PM2 functions may be involved in the adaptation of the metabolism of the host cell to the requirements of phage infection. This hypothesis originates from the identification of multiple phage-mediated modifications of the host's photosynthetic apparatus that appear to be essential for maintaining energy production during the lytic cycle.
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页码:3188 / 3200
页数:13
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