Correlation of circular RNA abundance with proliferation - exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues

被引:626
作者
Bachmayr-Heyda, Anna [1 ,2 ]
Reiner, Agnes T. [1 ,2 ]
Auer, Katharina [1 ,2 ]
Sukhbaatar, Nyamdelger [1 ,2 ]
Aust, Stefanie [1 ,2 ]
Bachleitner-Hofmann, Thomas [3 ]
Mesteri, Ildiko [4 ]
Grunt, Thomas W. [2 ,5 ]
Zeillinger, Robert [1 ,2 ]
Pils, Dietmar [1 ,2 ]
机构
[1] Med Univ Vienna, Ctr Comprehens Canc, Mol Oncol Grp, Dept Obstet & Gynecol, Vienna, Austria
[2] Ludwig Boltzmann Cluster Translat Oncol, Vienna, Austria
[3] Med Univ Vienna, Dept Surg, Vienna, Austria
[4] Med Univ Vienna, Dept Pathol, Vienna, Austria
[5] Med Univ Vienna, Ctr Comprehens Canc, Dept Med 1, Vienna, Austria
来源
SCIENTIFIC REPORTS | 2015年 / 5卷
关键词
PULMONARY-FIBROSIS; INHIBITOR; ALIGNMENT;
D O I
10.1038/srep08057
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Circular RNAs are a recently (re-) discovered abundant RNA species with presumed function as miRNA sponges, thus part of the competing endogenous RNA network. We analysed the expression of circular and linear RNAs and proliferation in matched normal colon mucosa and tumour tissues. We predicted >1,800 circular RNAs and proved the existence of five randomly chosen examples using RT-qPCR. Interestingly, the ratio of circular to linear RNA isoforms was always lower in tumour compared to normal colon samples and even lower in colorectal cancer cell lines. Furthermore, this ratio correlated negatively with the proliferation index. The correlation of global circular RNA abundance (the circRNA index) and proliferation was validated in a non-cancerous proliferative disease, idiopathic pulmonary fibrosis, ovarian cancer cells compared to cultured normal ovarian epithelial cells, and 13 normal human tissues. We are the first to report a global reduction of circular RNA abundance in colorectal cancer cell lines and cancer compared to normal tissues and discovered a negative correlation of global circular RNA abundance and proliferation. This negative correlation seems to be a general principle in human tissues as validated with three different settings. Finally, we present a simple model how circular RNAs could accumulate in non-proliferating cells.
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页数:10
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