Promiscuity and selectivity of bitter molecules and their receptors

被引:95
作者
Di Pizio, Antonella
Niv, Masha Y. [1 ]
机构
[1] Hebrew Univ Jerusalem, Robert H Smith Fac Agr Food & Environm, Inst Biochem Food Sci & Nutr, IL-76100 Rehovot, Israel
基金
以色列科学基金会;
关键词
Chemosensory; Chemical senses; Molecular recognition; GPCR; Canonical binding site; Orthosteric; Modeling; PROTEIN-COUPLED RECEPTORS; TASTE RECEPTORS; ENZYME PROMISCUITY; DRUG DISCOVERY; DATABASE; EVOLUTIONARY; IDENTIFICATION; PHARMACOLOGY; FAMILY;
D O I
10.1016/j.bmc.2015.04.025
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Bitter taste is essential for survival, as it protects against consuming poisonous compounds, which are often bitter. Bitter taste perception is mediated by bitter taste receptors (TAS2Rs), a subfamily of G-protein coupled receptors (GPCRs). The number of TAS2R subtypes is species-dependent, and varies from 3 in chicken to 50 in frog. TAS2Rs present an intriguing case for studying promiscuity: some of the receptors are still orphan, or have few known agonists, while others can be activated by numerous, structurally dissimilar compounds. The ligands also vary in the repertoire of TAS2Rs that they activate: some bitter compounds are selective toward a single TAS2R, while others activate multiple TAS2Rs. Selectivity/promiscuity profile of bitter taste receptors and their compounds was explored by a chemoinformatic approach. TAS2R-promiscuous and TAS2R-selective bitter molecules were found to differ in chemical features, such as AlogP, E-state, total charge, number of rings, globularity, and heavy atom count. This allowed the prediction of bitter ligand selectivity toward TAS2Rs. Interestingly, while promiscuous TAS2Rs are activated by both TAS2R-promiscuous and TAS2R-selective compounds, almost all selective TAS2Rs in human are activated by promiscuous compounds, which are recognized by other TAS2Rs anyway. Thus, unique ligands, that may have been the evolutionary driving force for development of selective TAS2Rs, still need to be unraveled. (C) 2015 Elsevier Ltd. All rights reserved.
引用
收藏
页码:4082 / 4091
页数:10
相关论文
共 55 条
[41]   What Can Crystal Structures of Aminergic Receptors Tell Us about Designing Subtype-Selective Ligands? [J].
Michino, Mayako ;
Beuming, Thijs ;
Donthamsetti, Prashant ;
Newman, Amy Hauck ;
Javitch, Jonathan A. ;
Shi, Lei .
PHARMACOLOGICAL REVIEWS, 2015, 67 (01) :198-213
[42]   Protein promiscuity and its implications for biotechnology [J].
Nobeli, Irene ;
Favia, Angelo D. ;
Thornton, Janet M. .
NATURE BIOTECHNOLOGY, 2009, 27 (02) :157-167
[43]   Independent HHsearch, Needleman-Wunsch-Based, and Motif Analyses Reveal the Overall Hierarchy for Most of the G Protein-Coupled Receptor Families [J].
Nordstrom, Karl J. V. ;
Almen, Markus Sallman ;
Edstam, Monika M. ;
Fredriksson, Robert ;
Schioth, Helgi B. .
MOLECULAR BIOLOGY AND EVOLUTION, 2011, 28 (09) :2471-2480
[44]   Enzyme Promiscuity: Engine of Evolutionary Innovation [J].
Pandya, Chetanya ;
Farelli, Jeremiah D. ;
Dunaway-Mariano, Debra ;
Allen, Karen N. .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2014, 289 (44) :30229-30236
[45]   PROMALS web server for accurate multiple protein sequence alignments [J].
Pei, Jimin ;
Kim, Bong-Hyun ;
Tang, Ming ;
Grishin, Nick V. .
NUCLEIC ACIDS RESEARCH, 2007, 35 :W649-W652
[46]   Polypharmacology - Foe or Friend? [J].
Peters, Jens-Uwe .
JOURNAL OF MEDICINAL CHEMISTRY, 2013, 56 (22) :8955-8971
[47]   Can we discover pharmacological promiscuity early in the drug discovery process? [J].
Peters, Jens-Uwe ;
Hert, Jerome ;
Bissantz, Caterina ;
Hillebrecht, Alexander ;
Gerebtzoff, Gregori ;
Bendels, Stefanie ;
Tillier, Fabien ;
Migeon, Jacques ;
Fischer, Holger ;
Guba, Wolfgang ;
Kansy, Manfred .
DRUG DISCOVERY TODAY, 2012, 17 (7-8) :325-335
[48]   Crystal structure of the β2 adrenergic receptor-Gs protein complex [J].
Rasmussen, Soren G. F. ;
DeVree, Brian T. ;
Zou, Yaozhong ;
Kruse, Andrew C. ;
Chung, Ka Young ;
Kobilka, Tong Sun ;
Thian, Foon Sun ;
Chae, Pil Seok ;
Pardon, Els ;
Calinski, Diane ;
Mathiesen, Jesper M. ;
Shah, Syed T. A. ;
Lyons, Joseph A. ;
Caffrey, Martin ;
Gellman, Samuel H. ;
Steyaert, Jan ;
Skiniotis, Georgios ;
Weis, William I. ;
Sunahara, Roger K. ;
Kobilka, Brian K. .
NATURE, 2011, 477 (7366) :549-U311
[49]   The impact of aromatic ring count on compound developability: further insights by examining carbo- and hetero-aromatic and -aliphatic ring types [J].
Ritchie, Timothy J. ;
Macdonald, Simon J. F. ;
Young, Robert J. ;
Pickett, Stephen D. .
DRUG DISCOVERY TODAY, 2011, 16 (3-4) :164-171
[50]   IUPHAR-DB: updated database content and new features [J].
Sharman, Joanna L. ;
Benson, Helen E. ;
Pawson, Adam J. ;
Lukito, Veny ;
Mpamhanga, Chidochangu P. ;
Bombail, Vincent ;
Davenport, Anthony P. ;
Peters, John A. ;
Spedding, Michael ;
Harmar, Anthony J. .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D1083-D1088