Discovery of metabolite features for the modelling and analysis of high-resolution NMR spectra

被引:71
作者
Cho, Hyun-Woo [2 ]
Kim, Seoung Bum [1 ]
Jeong, Myong K. [3 ]
Park, Youngja
Miller, Nana Gletsu [4 ]
Ziegler, Thomas R. [5 ]
Jones, Dean P. [5 ]
机构
[1] Univ Texas Arlington, Dept Ind & Mfg Syst Engn, Arlington, TX 76019 USA
[2] Univ Tennessee, Dept Ind & Informat Engn, Knoxville, TN 37996 USA
[3] Rutgers State Univ, Dept Ind & Syst Engn, Piscataway, NJ 08854 USA
[4] Emory Univ, Sch Med, Dept Surg, Atlanta, GA 30322 USA
[5] Emory Univ, Dept Med, Ctr Clin & Mol Nutr, Clin Biomarkers Lab, Atlanta, GA 30322 USA
基金
美国国家科学基金会;
关键词
Nuclear Magnetic Resonance; NMR; feature selection; metabolomics; multivariate statistical analysis; Orthogonal Signal Correction; OSC; data mining; bioinformatics;
D O I
10.1504/IJDMB.2008.019097
中图分类号
Q [生物科学];
学科分类号
07 [理学]; 0710 [生物学]; 09 [农学];
摘要
This study presents three feature selection methods for identifying the metabolite features in nuclear magnetic resonance spectra that contribute to the distinction of samples among varying nutritional conditions. Principal component analysis, Fisher discriminant analysis, and Partial Least Square Discriminant Analysis (PLS-DA) were used to calculate the importance of individual metabolic feature in spectra. Moreover, an Orthogonal Signal Correction (OSC) filter was used to eliminate unnecessary variations in spectra. We evaluated the presented methods by comparing the ability of classification based on the features selected by each methods by comparing the ability of classification based on the feartures selected by each method. The result showed that the best classification was achieved from an OSC-PLS-DA model.
引用
收藏
页码:176 / 192
页数:17
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