Application of a priori established gene sets to discover biologically important differential expression in microarray data

被引：44

作者：

Bild, A

Febbo, PG ^{[1
]}

机构：

[1] Duke Univ, Duke Inst Genome Sci & Policy, Durham, NC 27710 USA

[2] Duke Univ, Dept Med, Durham, NC 27710 USA

[3] Duke Univ, Med Ctr, Dept Mol Genet & Microbiol, Durham, NC 27710 USA

来源：

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA | 2005年 / 102卷 / 43期

关键词：

D O I：

10.1073/pnas.0507477102

中图分类号：

O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

引用

页码：15278 / 15279

页数：2

共 18 条

[1] PGC-1α at the crossroads of type 2 diabetes [J].

Attie, AD ;

Kendziorski, CM .

NATURE GENETICS, 2003, 34 (03) :244-245

[2]

Black EP, 2003, CANCER RES, V63, P3716

[3] Cluster analysis and display of genome-wide expression patterns [J].

Eisen, MB ;

Spellman, PT ;

Brown, PO ;

Botstein, D .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (25) :14863-14868

[4] Support vector machine classification and validation of cancer tissue samples using microarray expression data [J].

Furey, TS ;

Cristianini, N ;

Duffy, N ;

Bednarski, DW ;

Schummer, M ;

Haussler, D .

BIOINFORMATICS, 2000, 16 (10) :906-914

[5] Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring [J].

Golub, TR ;

Slonim, DK ;

Tamayo, P ;

Huard, C ;

Gaasenbeek, M ;

Mesirov, JP ;

Coller, H ;

Loh, ML ;

Downing, JR ;

Caligiuri, MA ;

Bloomfield, CD ;

Lander, ES .

SCIENCE, 1999, 286 (5439) :531-537

[6] Gene expression phenotypic models that predict the activity of oncogenic pathways [J].

Huang, E ;

Ishida, S ;

Pittman, J ;

Dressman, H ;

Bild, A ;

Kloos, M ;

D'Amico, M ;

Pestell, RG ;

West, M ;

Nevins, JR .

NATURE GENETICS, 2003, 34 (02) :226-230

[7] The transcriptional program in the response of human fibroblasts to serum [J].

Iyer, VR ;

Eisen, MB ;

Ross, DT ;

Schuler, G ;

Moore, T ;

Lee, JCF ;

Trent, JM ;

Staudt, LM ;

Hudson, J ;

Boguski, MS ;

Lashkari, D ;

Shalon, D ;

Botstein, D ;

Brown, PO .

SCIENCE, 1999, 283 (5398) :83-87

[8] mTOR inhibition reverses Akt-dependent prostate intraepithelial neoplasia through regulation of apoptotic and HIF-1-dependent pathways [J].

Majumder, PK ;

Febbo, PG ;

Bikoff, R ;

Berger, R ;

Xue, Q ;

McMahon, LM ;

Manola, J ;

Brugarolas, J ;

McDonnell, TJ ;

Golub, TR ;

Loda, M ;

Lane, HA ;

Sellers, WR .

NATURE MEDICINE, 2004, 10 (06) :594-601

[9] PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes [J].

Mootha, VK ;

Lindgren, CM ;

Eriksson, KF ;

Subramanian, A ;

Sihag, S ;

Lehar, J ;

Puigserver, P ;

Carlsson, E ;

Ridderstråle, M ;

Laurila, E ;

Houstis, N ;

Daly, MJ ;

Patterson, N ;

Mesirov, JP ;

Golub, TR ;

Tamayo, P ;

Spiegelman, B ;

Lander, ES ;

Hirschhorn, JN ;

Altshuler, D ;

Groop, LC .

NATURE GENETICS, 2003, 34 (03) :267-273

[10] α-methylacyl coenzyme A racemase as a tissue biomarker for prostate cancer [J].

Rubin, MA ;

Zhou, M ;

Dhanasekaran, SM ;

Varambally, S ;

Barrette, TR ;

Sanda, MG ;

Pienta, KJ ;

Ghosh, D ;

Chinnaiyan, AM .

JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION, 2002, 287 (13) :1662-1670

← 1 2 →