Metabolic Signatures of Lung Cancer in Biofluids: NMR-Based Metabonomics of Urine

被引:189
作者
Carrola, Joana [1 ]
Rocha, Claudia M. [1 ]
Barros, Antonio S. [2 ]
Gil, Ana M. [1 ]
Goodfellow, Brian J. [1 ,6 ]
Carreira, Isabel M. [4 ,5 ,6 ]
Bernardo, Joao [3 ,6 ]
Gomes, Ana [3 ,6 ]
Sousa, Vitor [3 ,6 ,7 ]
Carvalho, Lina [3 ,6 ,7 ]
Duarte, Iola F. [1 ,6 ]
机构
[1] Univ Aveiro, Dept Chem, CICECO, P-3810193 Aveiro, Portugal
[2] Univ Aveiro, Dept Chem, QOPNA, P-3810193 Aveiro, Portugal
[3] Univ Hosp Coimbra, P-3000075 Coimbra, Portugal
[4] Univ Coimbra, Fac Med, Cytogenet Lab, P-3000 Coimbra, Portugal
[5] Univ Coimbra, Fac Med, CNC, P-3000 Coimbra, Portugal
[6] Univ Coimbra, Fac Med, CIMAGO, P-3000 Coimbra, Portugal
[7] Univ Coimbra, Fac Med, Inst Pathol Anat, P-3000 Coimbra, Portugal
关键词
lung cancer; NMR spectroscopy; metabonomics; urine; metabolic profile; NUCLEAR-MAGNETIC-RESONANCE; MASS-SPECTROMETRY; BLADDER-CANCER; SPECTROSCOPY; BIOMARKER; SARCOSINE; PROFILES;
D O I
10.1021/pr100899x
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In this study, H-1 NMR-based metabonomics has been applied, for the first time to our knowledge, to investigate lung cancer metabolic signatures in urine, aiming at assessing the diagnostic potential of this approach and gaining novel insights into lung cancer metabolism and systemic effects. Urine samples from lung cancer patients (n = 71) and a control healthy group (n = 54) were analyzed by high resolution H-1 NMR (500 MHz), and their spectral profiles subjected to multivariate statistics, namely, Principal Component Analysis (PCA), Partial Least Squares Discriminant Analysis (PLS-DA), and Orthogonal Projections to Latent Structures (OPLS)-DA. Very good discrimination between cancer and control groups was achieved by multivariate modeling of urinary profiles. By Monte Carlo Cross Validation, the classification model showed 93% sensitivity, 94% specificity and an overall classification rate of 93.5%. The possible confounding influence of other factors, namely, gender and age, have also been modeled and found to have much lower predictive power than the presence of the disease. Moreover, smoking habits were found not to have a dominating influence over class discrimination. The main metabolites contributing to this discrimination, as highlighted by multivariate analysis and confirmed by spectral integration, were hippurate and trigonelline (reduced in patients), and beta-hy-droxyisovalerate, alpha-hydroxyisobutyrate, N-acetylglutamine, and creatinine (elevated in patients relatively to controls). These results show the valuable potential of NMR-based metabonomics for finding putative biomarkers of lung cancer in urine, collected in a minimally invasive way, which may have important diagnostic impact, provided that these metabolites are found to be specifically disease-related.
引用
收藏
页码:221 / 230
页数:10
相关论文
共 42 条
[1]   Combining desorption electrospray ionization mass spectrometry and nuclear magnetic resonance for differential metabolomics without sample preparation [J].
Chen, Huanwen ;
Pan, Zhengzheng ;
Talaty, Nari ;
Raftery, Daniel ;
Cooks, R. Graham .
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 2006, 20 (10) :1577-1584
[2]   Metabonomics study of liver cancer based on ultra performance liquid chromatography coupled to mass spectrometry with HILIC and RPLC separations [J].
Chen, Jing ;
Wang, Wenzhao ;
Lv, Shen ;
Yin, Peiyuan ;
Zhao, Xinjie ;
Lu, Xin ;
Zhang, Fengxia ;
Xu, Guowang .
ANALYTICA CHIMICA ACTA, 2009, 650 (01) :3-9
[3]   RRLC-MS/MS-based metabonomics combined with in-depth analysis of metabolic correlation network: finding potential biomarkers for breast cancer [J].
Chen, Yanhua ;
Zhang, Ruiping ;
Song, Yongmei ;
He, Jiuming ;
Sun, Jianghao ;
Bai, Jinfa ;
An, Zhuoling ;
Dong, Lijia ;
Zhan, Qimin ;
Abliz, Zeper .
ANALYST, 2009, 134 (10) :2003-2011
[4]   Characterizing Human Cancer Metabolomics with ex vivo 1H HRMAS MRS [J].
DeFeo, Elita M. ;
Cheng, Leo L. .
TECHNOLOGY IN CANCER RESEARCH & TREATMENT, 2010, 9 (04) :381-391
[5]   Can nuclear magnetic resonance (NMR) spectroscopy reveal different metabolic signatures for lung tumours? [J].
Duarte, Iola F. ;
Rocha, Claudia M. ;
Barros, Antonio S. ;
Gil, Ana M. ;
Goodfellow, Brian J. ;
Carreira, Isabel M. ;
Bernardo, Joao ;
Gomes, Ana ;
Sousa, Vitor ;
Carvalho, Lina .
VIRCHOWS ARCHIV, 2010, 457 (06) :715-725
[6]   Assessment of analytical reproducibility of 1H NMR spectroscopy based metabonomics for large-scale epidemiological research:: the INTERMAP study [J].
Dumas, ME ;
Maibaum, EC ;
Teague, C ;
Ueshima, H ;
Zhou, BF ;
Lindon, JC ;
Nicholson, JK ;
Stamler, J ;
Elliott, P ;
Chan, Q ;
Holmes, E .
ANALYTICAL CHEMISTRY, 2006, 78 (07) :2199-2208
[7]   Altered regulation of metabolic pathways in human lung cancer discerned by 13C stable isotope-resolved metabolomics (SIRM) [J].
Fan, Teresa W. M. ;
Lane, Andrew N. ;
Higashi, Richard M. ;
Farag, Mohamed A. ;
Gao, Hong ;
Bousamra, Michael ;
Miller, Donald M. .
MOLECULAR CANCER, 2009, 8
[8]   Metabolic profiles of cancer cells [J].
Griffin, JL ;
Shockcor, JP .
NATURE REVIEWS CANCER, 2004, 4 (07) :551-561
[9]   Understanding the Warburg Effect: The Metabolic Requirements of Cell Proliferation [J].
Heiden, Matthew G. Vander ;
Cantley, Lewis C. ;
Thompson, Craig B. .
SCIENCE, 2009, 324 (5930) :1029-1033
[10]   Prediction of breast cancer by profiling of urinary RNA metabolites using Support Vector Machine-based feature selection [J].
Henneges, Carsten ;
Bullinger, Dino ;
Fux, Richard ;
Friese, Natascha ;
Seeger, Harald ;
Neubauer, Hans ;
Laufer, Stefan ;
Gleiter, Christoph H. ;
Schwab, Matthias ;
Zell, Andreas ;
Kammerer, Bernd .
BMC CANCER, 2009, 9