Molecular recognition by glycoside pseudo base pairs and triples in an apramycin-RNA complex

被引:57
作者
Han, Q
Zhao, Q
Fish, S
Simonsen, KB
Vourloumis, D
Froelich, JM
Wall, D
Hermann, T
机构
[1] Anadys Pharmacet Inc, Dept Struct Chem, San Diego, CA 92121 USA
[2] Anadys Pharmacet Inc, Dept Med Chem, San Diego, CA 92121 USA
[3] Anadys Pharmacet Inc, Dept Microbiol, San Diego, CA 92121 USA
关键词
antibiotics; glycosides; molecular recognition; RNA; structure-activity relationships;
D O I
10.1002/anie.200500028
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
(Figure Presented) In the groove: The crystal structure of the bacterial decoding-site RNA in a complex with the antibiotic apramycin reveals how glycoside scaffolds participate in RNA recognition by natural products through the formation of pseudo base pairs and triples. The structure suggests that the inhibitory action of apramycin is based on interaction of the antibiotic with ribosomal protein S12 (see structural model), a control element of ribosome translocation. © 2005 Wiley-VCH Verlag GmbH & Co. KGaA.
引用
收藏
页码:2694 / 2700
页数:7
相关论文
共 58 条
[31]   Recognition of cognate transfer RNA by the 30S ribosomal subunit [J].
Ogle, JM ;
Brodersen, DE ;
Clemons, WM ;
Tarry, MJ ;
Carter, AP ;
Ramakrishnan, V .
SCIENCE, 2001, 292 (5518) :897-902
[32]   Processing of X-ray diffraction data collected in oscillation mode [J].
Otwinowski, Z ;
Minor, W .
MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 :307-326
[33]   EFFECTS OF APRAMYCIN, A NOVEL AMINOGLYCOSIDE ANTIBIOTIC ON BACTERIAL PROTEIN-SYNTHESIS [J].
PERZYNSKI, S ;
CANNON, M ;
CUNDLIFFE, E ;
CHAHWALA, SB ;
DAVIES, J .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1979, 99 (03) :623-628
[34]   The molecular basis for A-site mutations conferring aminoglycoside resistance:: Relationship between ribosomal susceptibility and X-ray crystal structures [J].
Pfister, P ;
Hobbie, S ;
Vicens, Q ;
Böttger, EC ;
Westhof, E .
CHEMBIOCHEM, 2003, 4 (10) :1078-1088
[35]   Basis for prokaryotic specificity of action of aminoglycoside antibiotics [J].
Recht, MI ;
Douthwaite, S ;
Puglisi, JD .
EMBO JOURNAL, 1999, 18 (11) :3133-3138
[36]   Aminoglycoside resistance with homogeneous and heterogeneous populations of antibiotic-resistant ribosomes [J].
Recht, MI ;
Puglisi, JD .
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 2001, 45 (09) :2414-2419
[37]   INVITRO ACTIVITY OF APRAMYCIN, A NEW AMINOCYCLITOL ANTIBIOTIC [J].
RYDEN, R ;
MOORE, BJ .
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY, 1977, 3 (06) :609-613
[38]   Piperidine glycosides targeting the ribosomal decoding site [J].
Simonsen, KB ;
Ayida, BK ;
Vourloumis, D ;
Winters, GC ;
Takahashi, M ;
Shandrick, S ;
Zhao, Q ;
Hermann, T .
CHEMBIOCHEM, 2003, 4 (09) :886-890
[39]  
Simonsen KB, 2002, CHEMBIOCHEM, V3, P1223, DOI 10.1002/1439-7633(20021202)3:12<1223::AID-CBIC1223>3.0.CO
[40]  
2-W