Novel mass tags for single nucleotide polymorphism detection

被引:12
作者
Birikh, Koara R. [1 ]
Korshun, Vladimir A. [1 ]
Bernad, Pablo L. [3 ]
Malakhov, Andrei D. [1 ,3 ]
Milner, Natalie [3 ]
Khan, Safraz [3 ]
Southern, Edwin M. [2 ]
Shchepinov, Mikhail S. [3 ]
机构
[1] RAS, Shemyakin Ovchinikov Inst Bioorgan Chem, Moscow 117997, Russia
[2] Univ Oxford, Dept Biochem, Oxford OX1 3QU, England
[3] Tridend Technol, Div Oxford Gene Technol Ltd, Oxford OX5 1PF, England
关键词
D O I
10.1021/ac071291y
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
A new method suitable for single nucleotide polymorphism detection and other applications based on oligonucleotide probe extension has been developed. The method is based on mass spectrometry and utilizes a single surface for affinity purification of extended probes and matrix-independent desorption/ionization of the cleavable labels. A new family of sulfur-linked laser-cleavable trityl labels with vastly improved flying abilities is implemented in this study. Corresponding reagents compatible with automated oligonucleotide synthesis are presented. Utility of this method for SNP genotyping is demonstrated.
引用
收藏
页码:2342 / 2350
页数:9
相关论文
共 10 条
[1]   Convenient enantioselective synthesis of new 1,4-sulfanyl alcohols from γ-lactones [J].
Filippi, JJ ;
Fernandez, X ;
Lizzani-Cuvelier, L ;
Loiseau, AM .
TETRAHEDRON LETTERS, 2002, 43 (35) :6267-6270
[2]   Analysis of nucleic acids by FTICR MS [J].
Hofstadler, SA ;
Sannes-Lowery, KA ;
Hannis, JC .
MASS SPECTROMETRY REVIEWS, 2005, 24 (02) :265-285
[3]  
Kokoris M, 2000, MOL DIAGN, V5, P329
[4]   Mass spectrometry-based proteomics in the life sciences [J].
Lane, CS .
CELLULAR AND MOLECULAR LIFE SCIENCES, 2005, 62 (7-8) :848-869
[5]  
Marnellos G, 2003, CURR OPIN DRUG DI DE, V6, P317
[6]   Trityl tags for encoding in combinatorial synthesis [J].
Shchepinov, MS ;
Chalk, R ;
Southern, EM .
TETRAHEDRON, 2000, 56 (17) :2713-2724
[7]   Oligonucleotide dendrimers: synthesis and use as polylabelled DNA probes [J].
Shchepinov, MS ;
Udalova, IA ;
Bridgman, AJ ;
Southern, EM .
NUCLEIC ACIDS RESEARCH, 1997, 25 (22) :4447-4454
[8]  
Shi Michael M, 2002, Am J Pharmacogenomics, V2, P197, DOI 10.2165/00129785-200202030-00005
[9]  
Storm Niels, 2003, Methods Mol Biol, V212, P241
[10]   DNA analysis by mass spectrometry - past, present and future [J].
Tost, Jorg ;
Gut, Ivo Glynne .
JOURNAL OF MASS SPECTROMETRY, 2006, 41 (08) :981-995