Prerequisites, performance and profits of transcriptional profiling the abiotic stress response

被引:38
作者
Kilian, Joachim [1 ]
Peschke, Florian [1 ]
Berendzen, Kenneth W. [1 ]
Harter, Klaus [1 ]
Wanke, Dierk [1 ]
机构
[1] Univ Tubingen, Ctr Plant Mol Biol ZMBP Plant Physiol, D-72076 Tubingen, Germany
来源
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS | 2012年 / 1819卷 / 02期
关键词
AtGenExpress; Abiotic stress; Microarray; Core environmental stress response; Plant-CESR; Experimental comparability; MICROARRAY EXPERIMENT MIAME; CONTRASTING RICE GENOTYPES; GENE-EXPRESSION PATTERNS; GENOME-WIDE ANALYSIS; MODEL DATA-ANALYSIS; NITRIC-OXIDE; SALICYLIC-ACID; ABSCISIC-ACID; TEMPERATURE STRESS; HYDROGEN-PEROXIDE;
D O I
10.1016/j.bbagrm.2011.09.005
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
During the last decade, microarrays became a routine tool for the analysis of transcripts in the model plant Arabidopsis thaliana and the crop plant species rice, poplar or barley. The overwhelming amount of data generated by gene expression studies is a valuable resource for every scientist. Here, we summarize the most important findings about the abiotic stress responses in plants. Interestingly, conserved patterns of gene expression responses have been found that are common between different abiotic stresses or that are conserved between different plant species. However, the individual histories of each plant affect the inter-comparability between experiments already before the onset of the actual stress treatment. This review outlines multiple aspects of microarray technology and highlights some of the benefits, limitations and also pitfalls of the technique. This article is part of a Special Issue entitled: Plant gene regulation in response to abiotic stress. (C) 2011 Elsevier B.V. All rights reserved.
引用
收藏
页码:166 / 175
页数:10
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