AP-1 Contributes to Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion During Zebrafish Heart Regeneration

被引:123
作者
Beisaw, Arica [1 ,3 ]
Kuenne, Carsten [2 ]
Guenther, Stefan [2 ,3 ]
Dallmann, Julia [1 ]
Wu, Chi-Chung [1 ]
Bentsen, Mette [2 ]
Looso, Mario [2 ]
Stainier, Didier Y. R. [1 ,3 ]
机构
[1] Max Planck Inst Heart & Lung Res, Dept Dev Genet, Ludwigstr 43, D-61231 Bad Nauheim, Germany
[2] Max Planck Inst Heart & Lung Res, ECCPS Bioinformat & Deep Sequencing Platform, Bad Nauheim, Germany
[3] Max Planck Inst Heart & Lung Res, German Ctr Cardiovasc Res DZHK, Partner Site Rhine Main, Bad Nauheim, Germany
基金
美国国家卫生研究院;
关键词
cardiomyocyte protrusion; chromatin; regeneration; transcription factors; zebrafish; INTEGRIN-LINKED KINASE; BINDING-SITES; CELL-ADHESION; DNA-BINDING; IN-VIVO; PROTEIN; GROWTH; JUN; DEDIFFERENTIATION; PHOSPHORYLATION;
D O I
10.1161/CIRCRESAHA.119.316167
中图分类号
R5 [内科学];
学科分类号
100201 [内科学];
摘要
Rationale: The adult human heart is an organ with low regenerative potential. Heart failure following acute myocardial infarction is a leading cause of death due to the inability of cardiomyocytes to proliferate and replenish lost cardiac muscle. While the zebrafish has emerged as a powerful model to study endogenous cardiac regeneration, the molecular mechanisms by which cardiomyocytes respond to damage by disassembling sarcomeres, proliferating, and repopulating the injured area remain unclear. Furthermore, we are far from understanding the regulation of the chromatin landscape and epigenetic barriers that must be overcome for cardiac regeneration to occur. Objective: To identify transcription factor regulators of the chromatin landscape, which promote cardiomyocyte regeneration in zebrafish, and investigate their function. Methods and Results: Using the Assay for Transposase-Accessible Chromatin coupled to high-throughput sequencing (ATAC-Seq), we first find that the regenerating cardiomyocyte chromatin accessibility landscape undergoes extensive changes following cryoinjury, and that activator protein-1 (AP-1) binding sites are the most highly enriched motifs in regions that gain accessibility during cardiac regeneration. Furthermore, using bioinformatic and gene expression analyses, we find that the AP-1 response in regenerating adult zebrafish cardiomyocytes is largely different from the response in adult mammalian cardiomyocytes. Using a cardiomyocyte-specific dominant negative approach, we show that blocking AP-1 function leads to defects in cardiomyocyte proliferation as well as decreased chromatin accessibility at thefbxl22andilkloci, which regulate sarcomere disassembly and cardiomyocyte protrusion into the injured area, respectively. We further show that overexpression of theAP-1family membersJunbandFosl1can promote changes in mammalian cardiomyocyte behavior in vitro. Conclusions: AP-1 transcription factors play an essential role in the cardiomyocyte response to injury by regulating chromatin accessibility changes, thereby allowing the activation of gene expression programs that promote cardiomyocyte dedifferentiation, proliferation, and protrusion into the injured area.
引用
收藏
页码:1760 / 1778
页数:19
相关论文
共 95 条
[1]
In Vivo Activation of a Conserved MicroRNA Program Induces Mammalian Heart Regeneration [J].
Aguirre, Aitor ;
Montserrat, Nuria ;
Zacchigna, Serena ;
Nivet, Emmanuel ;
Hishida, Tomoaki ;
Krause, Marie N. ;
Kurian, Leo ;
Ocampo, Alejandro ;
Vazquez-Ferrer, Eric ;
Rodriguez-Esteban, Concepcion ;
Kumar, Sachin ;
Moresco, James J. ;
Yates, John R., III ;
Campistol, Josep M. ;
Sancho-Martinez, Ignacio ;
Giacca, Mauro ;
Belmonte, Juan Carlos Izpisua .
CELL STEM CELL, 2014, 15 (05) :589-604
[2]
Differential expression analysis for sequence count data [J].
Anders, Simon ;
Huber, Wolfgang .
GENOME BIOLOGY, 2010, 11 (10)
[3]
Sequence and chromatin determinants of cell-type-specific transcription factor binding [J].
Arvey, Aaron ;
Agius, Phaedra ;
Noble, William Stafford ;
Leslie, Christina .
GENOME RESEARCH, 2012, 22 (09) :1723-1734
[4]
Bivariate Genomic Footprinting Detects Changes in Transcription Factor Activity [J].
Baek, Songjoon ;
Goldstein, Ido ;
Hager, Gordon L. .
CELL REPORTS, 2017, 19 (08) :1710-1722
[5]
The extracellular matrix protein agrin promotes heart regeneration in mice [J].
Bassat, Elad ;
Mutlak, Yara Eid ;
Genzelinakh, Alex ;
Shadrin, Ilya Y. ;
Umansky, Kfir Baruch ;
Yifa, Oren ;
Kain, David ;
Rajchman, Dana ;
Leach, John ;
Bassat, Daria Riabov ;
Udi, Yael ;
Sarig, Rachel ;
Sagi, Irit ;
Martin, James F. ;
Bursac, Nenad ;
Cohen, Shenhav ;
Tzahor, Eldad .
NATURE, 2017, 547 (7662) :179-+
[6]
Dynamic microRNA-101a and Fosab expression controls zebrafish heart regeneration [J].
Beauchemin, Megan ;
Smith, Ashley ;
Yin, Viravuth P. .
DEVELOPMENT, 2015, 142 (23) :4026-4037
[7]
H3K27me3-mediated silencing of structural genes is required for zebrafish heart regeneration [J].
Ben-Yair, Raz ;
Butty, Vincent L. ;
Busby, Michele ;
Qiu, Yutong ;
Levine, Stuart S. ;
Goren, Alon ;
Boyer, Laurie A. ;
Burns, C. Geoffrey ;
Burns, Caroline E. .
DEVELOPMENT, 2019, 146 (19)
[8]
Benjamin EJ, 2019, CIRCULATION, V139, pE56, DOI [10.1161/CIR.0000000000000746, 10.1161/CIR.0000000000000659]
[9]
Evidence for Cardiomyocyte Renewal in Humans [J].
Bergmann, Olaf ;
Bhardwaj, Ratan D. ;
Bernard, Samuel ;
Zdunek, Sofia ;
Barnabe-Heider, Fanie ;
Walsh, Stuart ;
Zupicich, Joel ;
Alkass, Kanar ;
Buchholz, Bruce A. ;
Druid, Henrik ;
Jovinge, Stefan ;
Frisen, Jonas .
SCIENCE, 2009, 324 (5923) :98-102
[10]
Transcription Factor AP1 Potentiates Chromatin Accessibility and Glucocorticoid Receptor Binding [J].
Biddie, Simon C. ;
John, Sam ;
Sabo, Pete J. ;
Thurman, Robert E. ;
Johnson, Thomas A. ;
Schiltz, R. Louis ;
Miranda, Tina B. ;
Sung, Myong-Hee ;
Trump, Saskia ;
Lightman, Stafford L. ;
Vinson, Charles ;
Stamatoyannopoulos, John A. ;
Hager, Gordon L. .
MOLECULAR CELL, 2011, 43 (01) :145-155