GeneRetriever:: software to extract all genes and transcripts in between two genetic markers to assist design of human custom microarrays

被引：1

作者：

Clément-Ziza, M

Brody, Y

Munnich, A

Lyonnet, S

Besmond, C

机构：

[1] Hop Necker Enfants Malad, INSERM, U393, F-75015 Paris, France

[2] Bar Ilan Univ, Ramat Gan, Israel

来源：

BIOTECHNIQUES | 2005年 / 39卷 / 02期

关键词：

D O I：

10.2144/05392BM04

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

[No abstract available]

引用

页码：180 / +

页数：3

共 10 条

[1] An overview of ensembl [J].

Birney, E ;

Andrews, TD ;

Bevan, P ;

Caccamo, M ;

Chen, Y ;

Clarke, L ;

Coates, G ;

Cuff, J ;

Curwen, V ;

Cutts, T ;

Down, T ;

Eyras, E ;

Fernandez-Suarez, XM ;

Gane, P ;

Gibbins, B ;

Gilbert, J ;

Hammond, M ;

Hotz, HR ;

Iyer, V ;

Jekosch, K ;

Kahari, A ;

Kasprzyk, A ;

Keefe, D ;

Keenan, S ;

Lehvaslaiho, H ;

McVicker, G ;

Melsopp, C ;

Meidl, P ;

Mongin, E ;

Pettett, R ;

Potter, S ;

Proctor, G ;

Rae, M ;

Searle, S ;

Slater, G ;

Smedley, D ;

Smith, J ;

Spooner, W ;

Stabenau, A ;

Stalker, J ;

Storey, R ;

Ureta-Vidal, A ;

Woodwark, KC ;

Cameron, G ;

Durbin, R ;

Cox, A ;

Hubbard, T ;

Clamp, M .

GENOME RESEARCH, 2004, 14 (05) :925-928

[2] Segregation at three loci explains familial and population risk in Hirschsprung disease [J].

Gabriel, SB ;

Salomon, R ;

Pelet, A ;

Angrist, M ;

Amiel, J ;

Fornage, M ;

Attié-Bitach, T ;

Olson, JM ;

Hofstra, R ;

Buys, C ;

Steffann, J ;

Munnich, A ;

Lyonnet, S ;

Chakravarti, A .

NATURE GENETICS, 2002, 31 (01) :89-93

[3] RRE: a tool for the extraction of non-coding regions surrounding annotated genes from genomic datasets [J].

Lazzarato, F ;

Franceschinis, G ;

Botta, M ;

Cordero, F ;

Calogero, RA .

BIOINFORMATICS, 2004, 20 (16) :2848-2850

[4] NetAffx: Affymetrix probesets and annotations [J].

Liu, GY ;

Loraine, AE ;

Shigeta, R ;

Cline, M ;

Cheng, J ;

Valmeekam, V ;

Sun, S ;

Kulp, D ;

Siani-Rose, MA .

NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :82-86

[5] Entrez Gene: gene-centered information at NCBI [J].

Maglott, D ;

Ostell, J ;

Pruitt, KD ;

Tatusova, T .

NUCLEIC ACIDS RESEARCH, 2005, 33 :D54-D58

[6] The HUGO Gene Nomenclature Committee (HGNC) [J].

Povey, S ;

Lovering, R ;

Bruford, E ;

Wright, M ;

Lush, M ;

Wain, H .

HUMAN GENETICS, 2001, 109 (06) :678-680

[7] OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach [J].

Rouillard, JM ;

Zuker, M ;

Gulari, E .

NUCLEIC ACIDS RESEARCH, 2003, 31 (12) :3057-3062

[8] The ensembl core software libraries [J].

Stabenau, A ;

McVicker, G ;

Melsopp, C ;

Proctor, G ;

Clamp, M ;

Birney, E .

GENOME RESEARCH, 2004, 14 (05) :929-933

[9] Combining mapping and arraying: An approach to candidate gene identification [J].

Wayne, ML ;

McIntyre, LM .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (23) :14903-14906

[10] Database resources of the National Center for Biotechnology Information [J].

Wheeler, DL ;

Barrett, T ;

Benson, DA ;

Bryant, SH ;

Canese, K ;

Church, DM ;

Di Cuccio, M ;

Edgar, R ;

Federhen, S ;

Helmberg, W ;

Kenton, DL ;

Khovayko, O ;

Lipman, DJ ;

Madden, TL ;

Maglott, DR ;

Ostell, J ;

Pontius, JU ;

Pruitt, KD ;

Schuler, GD ;

Schriml, LM ;

Sequeira, E ;

Sherry, ST ;

Sirotkin, K ;

Starchenko, G ;

Suzek, TO ;

Tatusov, R ;

Tatusova, TA ;

Wagner, L ;

Yaschenko, E .

NUCLEIC ACIDS RESEARCH, 2005, 33 :D39-D45

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