DNA sequencing: bench to bedside and beyond

被引:132
作者
Hutchison, Clyde A., III [1 ]
机构
[1] J Craig Venter Inst, Rockville, MD 20850 USA
关键词
D O I
10.1093/nar/gkm688
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Fifteen years elapsed between the discovery of the double helix (1953) and the first DNA sequencing (1968). Modern DNA sequencing began in 1977, with development of the chemical method of Maxam and Gilbert and the dideoxy method of Sanger, Nicklen and Coulson, and with the first complete DNA sequence (phage X174), which demonstrated that sequence could give profound insights into genetic organization. Incremental improvements allowed sequencing of molecules 200 kb (human cytomegalovirus) leading to an avalanche of data that demanded computational analysis and spawned the field of bioinformatics. The US Human Genome Project spurred sequencing activity. By 1992 the first sequencing factory was established, and others soon followed. The first complete cellular genome sequences, from bacteria, appeared in 1995 and other eubacterial, archaebacterial and eukaryotic genomes were soon sequenced. Competition between the public Human Genome Project and Celera Genomics produced working drafts of the human genome sequence, published in 2001, but refinement and analysis of the human genome sequence will continue for the foreseeable future. New massively parallel sequencing methods are greatly increasing sequencing capacity, but further innovations are needed to achieve the thousand dollar genome that many feel is prerequisite to personalized genomic medicine. These advances will also allow new approaches to a variety of problems in biology, evolution and the environment.
引用
收藏
页码:6227 / 6237
页数:11
相关论文
共 105 条
  • [91] THE C-ELEGANS GENOME SEQUENCING PROJECT - A BEGINNING
    SULSTON, J
    DU, Z
    THOMAS, K
    WILSON, R
    HILLIER, L
    STADEN, R
    HALLORAN, N
    GREEN, P
    THIERRYMIEG, J
    QIU, L
    DEAR, S
    COULSON, A
    CRAXTON, M
    DURBIN, R
    BERKS, M
    METZSTEIN, M
    HAWKINS, T
    AINSCOUGH, R
    WATERSTON, R
    [J]. NATURE, 1992, 356 (6364) : 37 - 41
  • [92] Comparative metagenomics of microbial communities
    Tringe, SG
    von Mering, C
    Kobayashi, A
    Salamov, AA
    Chen, K
    Chang, HW
    Podar, M
    Short, JM
    Mathur, EJ
    Detter, JC
    Bork, P
    Hugenholtz, P
    Rubin, EM
    [J]. SCIENCE, 2005, 308 (5721) : 554 - 557
  • [93] Community structure and metabolism through reconstruction of microbial genomes from the environment
    Tyson, GW
    Chapman, J
    Hugenholtz, P
    Allen, EE
    Ram, RJ
    Richardson, PM
    Solovyev, VV
    Rubin, EM
    Rokhsar, DS
    Banfield, JF
    [J]. NATURE, 2004, 428 (6978) : 37 - 43
  • [94] Environmental genome shotgun sequencing of the Sargasso Sea
    Venter, JC
    Remington, K
    Heidelberg, JF
    Halpern, AL
    Rusch, D
    Eisen, JA
    Wu, DY
    Paulsen, I
    Nelson, KE
    Nelson, W
    Fouts, DE
    Levy, S
    Knap, AH
    Lomas, MW
    Nealson, K
    White, O
    Peterson, J
    Hoffman, J
    Parsons, R
    Baden-Tillson, H
    Pfannkoch, C
    Rogers, YH
    Smith, HO
    [J]. SCIENCE, 2004, 304 (5667) : 66 - 74
  • [95] The sequence of the human genome
    Venter, JC
    Adams, MD
    Myers, EW
    Li, PW
    Mural, RJ
    Sutton, GG
    Smith, HO
    Yandell, M
    Evans, CA
    Holt, RA
    Gocayne, JD
    Amanatides, P
    Ballew, RM
    Huson, DH
    Wortman, JR
    Zhang, Q
    Kodira, CD
    Zheng, XQH
    Chen, L
    Skupski, M
    Subramanian, G
    Thomas, PD
    Zhang, JH
    Miklos, GLG
    Nelson, C
    Broder, S
    Clark, AG
    Nadeau, C
    McKusick, VA
    Zinder, N
    Levine, AJ
    Roberts, RJ
    Simon, M
    Slayman, C
    Hunkapiller, M
    Bolanos, R
    Delcher, A
    Dew, I
    Fasulo, D
    Flanigan, M
    Florea, L
    Halpern, A
    Hannenhalli, S
    Kravitz, S
    Levy, S
    Mobarry, C
    Reinert, K
    Remington, K
    Abu-Threideh, J
    Beasley, E
    [J]. SCIENCE, 2001, 291 (5507) : 1304 - +
  • [96] VENTER JC, 2007, IN PRESS LIFE DECODE
  • [97] MOLECULAR STRUCTURE OF NUCLEIC ACIDS - A STRUCTURE FOR DEOXYRIBOSE NUCLEIC ACID
    WATSON, JD
    CRICK, FHC
    [J]. NATURE, 1953, 171 (4356) : 737 - 738
  • [98] Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli
    Welch, RA
    Burland, V
    Plunkett, G
    Redford, P
    Roesch, P
    Rasko, D
    Buckles, EL
    Liou, SR
    Boutin, A
    Hackett, J
    Stroud, D
    Mayhew, GF
    Rose, DJ
    Zhou, S
    Schwartz, DC
    Perna, NT
    Mobley, HLT
    Donnenberg, MS
    Blattner, FR
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (26) : 17020 - 17024
  • [99] WICKELGREN I, 2002, GENE MASTERS NEW BRE
  • [100] Use of a whole genome approach to identify vaccine molecules affording protection against Streptococcus pneumoniae infection
    Wizemann, TM
    Heinrichs, JH
    Adamou, JE
    Erwin, AL
    Kunsch, C
    Choi, GH
    Barash, SC
    Rosen, CA
    Masure, HR
    Tuomanen, E
    Gayle, A
    Brewah, YA
    Walsh, W
    Barren, P
    Lathigra, R
    Hanson, M
    Langermann, S
    Johnson, S
    Koenig, S
    [J]. INFECTION AND IMMUNITY, 2001, 69 (03) : 1593 - 1598