Semi-quantitative visual detection of loop mediated isothermal amplification (LAMP)-generated DNA by distance-based measurement on a paper device

被引:59
作者
Hongwarittorrn, Irin [1 ]
Chaichanawongsaroj, Nuntaree [2 ]
Laiwattanapaisal, Wanida [3 ]
机构
[1] Chulalongkorn Univ, Fac Allied Hlth Sci, Grad Program Clin Biochem & Mol Med, Bangkok 10330, Thailand
[2] Chulalongkorn Univ, Fac Allied Hlth Sci, Dept Transfus Med & Clin Microbiol, Bangkok 10330, Thailand
[3] Chulalongkorn Univ, Fac Allied Hlth Sci, Dept Clin Chem, Bangkok 10330, Thailand
关键词
Distance-based paper analytical devices; Loop mediated isothermal amplification (LAMP); Polyethylenimine (PEI); Hydroxynaphthol blue (HNE); RAPID DETECTION; SENSITIVE DETECTION; ASSAY; VIRUS; QUANTIFICATION; STRIP;
D O I
10.1016/j.talanta.2017.07.019
中图分类号
O65 [分析化学];
学科分类号
070302 ; 081704 ;
摘要
A distance-based paper analytical device (dPAD) for loop mediated isothermal amplification (LAMP) detection based on distance measurement was proposed. This approach relied on visual detection by the length of colour developed on the dPAD with reference to semi-quantitative determination of the initial amount of genomic DNA. In this communication, E. coil DNA was chosen as a template DNA for LAMP reaction. In accordance with the principle, the dPAD was immobilized by polyethylenimine (PEI), which is a strong cationic polymer, in the hydrophilic channel of the paper device. Hydroxynaphthol blue (HNB), a colourimetric indicator for monitoring the change of magnesium ion concentration in the LAMP reaction, was used to react with the immobilized PEI. The positive charges of PEI react with the negative charges of free HNB in the LAMP reaction, producing a blue colour deposit on the paper device. Consequently, the apparently visual distance appeared within 5 min and length of distance correlated to the amount of DNA in the sample. The distance-based PAD for the visual detection of the LAMP reaction could quantify the initial concentration of genomic DNA as low as 4.14 x 10(3) copies mu L-1. This distance-based visual semi-quantitative platform is suitable for choice of LAMP detection method, particular in resource-limited settings because of the advantages of low cost, simple fabrication and operation, disposability and portable detection of the dPAD device.
引用
收藏
页码:135 / 142
页数:8
相关论文
共 34 条
[1]   Visual Detection of West Nile Virus Using Reverse Transcription Loop-Mediated Isothermal Amplification Combined with a Vertical Flow Visualization Strip [J].
Cao, Zengguo ;
Wang, Hualei ;
Wang, Lina ;
Li, Ling ;
Jin, Hongli ;
Xu, Changping ;
Feng, Na ;
Wang, Jianzhong ;
Li, Qian ;
Zhao, Yongkun ;
Wang, Tiecheng ;
Gao, Yuwei ;
Lu, Yiyu ;
Yang, Songtao ;
Xia, Xianzhu .
FRONTIERS IN MICROBIOLOGY, 2016, 7
[2]   Multiplexed paper analytical device for quantification of metals using distance-based detection [J].
Cate, David M. ;
Noblitt, Scott D. ;
Volckens, John ;
Henry, Charles S. .
LAB ON A CHIP, 2015, 15 (13) :2808-2818
[3]   Simple, distance-based measurement for paper analytical devices [J].
Cate, David M. ;
Dungchai, Wijitar ;
Cunningham, Josephine C. ;
Volckens, John ;
Henry, Charles S. .
LAB ON A CHIP, 2013, 13 (12) :2397-2404
[4]   "Paper Machine" for Molecular Diagnostics [J].
Connelly, John T. ;
Rolland, Jason P. ;
Whitesides, George M. .
ANALYTICAL CHEMISTRY, 2015, 87 (15) :7595-7601
[5]   Detection of Severe Fever with Thrombocytopenia Syndrome Virus by Reverse Transcription-Cross-Priming Amplification Coupled with Vertical Flow Visualization [J].
Cui, Lunbiao ;
Ge, Yiyue ;
Qi, Xian ;
Xu, Gaolian ;
Li, Haijing ;
Zhao, Kangchen ;
Wu, Bin ;
Shi, Zhiyang ;
Guo, Xiling ;
Hu, Lin ;
You, Qimin ;
Zhang, Li-Hong ;
Freiberg, Alexander N. ;
Yu, Xuejie ;
Wang, Hua ;
Zhou, Minghao ;
Tang, Yi-Wei .
JOURNAL OF CLINICAL MICROBIOLOGY, 2012, 50 (12) :3881-3885
[6]   Rapid and sensitive detection of infectious spleen and kidney necrosis virus by loop-mediated isothermal amplification combined with a lateral flow dipstick [J].
Ding, W. C. ;
Chen, Jiong ;
Shi, Y. H. ;
Lu, X. J. ;
Li, M. Y. .
ARCHIVES OF VIROLOGY, 2010, 155 (03) :385-389
[7]   Novel reverse transcription loop-mediated isothermal amplification for rapid detection of foot-and-mouth disease virus [J].
Dukes, J. P. ;
King, D. P. ;
Alexandersen, S. .
ARCHIVES OF VIROLOGY, 2006, 151 (06) :1093-1106
[8]   Quantifying Colorimetric Assays in Paper-Based Microfluidic Devices by Measuring the Transmission of Light through Paper [J].
Ellerbee, Audrey K. ;
Phillips, Scott T. ;
Siegel, Adam C. ;
Mirica, Katherine A. ;
Martinez, Andres W. ;
Striehl, Pierre ;
Jain, Nina ;
Prentiss, Mara ;
Whitesides, George M. .
ANALYTICAL CHEMISTRY, 2009, 81 (20) :8447-8452
[9]   Colorimetric detection of loop-mediated isothermal amplification reaction by using hydroxy naphthol blue [J].
Goto, Motoki ;
Honda, Eiichi ;
Ogura, Atsuo ;
Nomoto, Akio ;
Hanaki, Ken-Ichi .
BIOTECHNIQUES, 2009, 46 (03) :167-+
[10]   Loop-mediated isothermal amplification assay for rapid detection of common strains of Escherichia coli [J].
Hill, Joshua ;
Beriwal, Shilpa ;
Chandra, Ishwad ;
Paul, Vinod K. ;
Kapil, Aarti ;
Singh, Tripti ;
Wadowsky, Robert M. ;
Singh, Vinita ;
Goyal, Ankur ;
Jahnukainen, Timo ;
Johnson, James R. ;
Tarr, Phillip I. ;
Vats, Abhay .
JOURNAL OF CLINICAL MICROBIOLOGY, 2008, 46 (08) :2800-2804