A global atlas of the dominant bacteria found in soil

被引:1508
作者
Delgado-Baquerizo, Manuel [1 ,2 ]
Oliverio, Angela M. [1 ,3 ]
Brewer, Tess E. [1 ,4 ]
Benavent-Gonzalez, Alberto [5 ]
Eldridge, David J. [6 ]
Bardgett, Richard D. [7 ]
Maestre, Fernando T. [2 ]
Singh, Brajesh K. [8 ,9 ]
Fierer, Noah [1 ,3 ]
机构
[1] Univ Colorado, Cooperat Inst Res Environm Sci, Boulder, CO 80309 USA
[2] Univ Rey Juan Carlos, Dept Biol & Geol, Fis & Quim Inorgan, Escuela Super Ciencias Expt & Tecnol, C Tulipan S-N, Mostoles 28933, Spain
[3] Univ Colorado, Dept Ecol & Evolutionary Biol, Boulder, CO 80309 USA
[4] Univ Colorado, Dept Mol Cellular & Dev Biol, Boulder, CO 80309 USA
[5] Univ Complutense Madrid, Fac Farm, Dept Biol Vegetal 2, E-28040 Madrid, Spain
[6] Univ New South Wales, Sch Biol Earth & Environm Sci, Ctr Ecosyst Sci, Sydney, NSW 2052, Australia
[7] Univ Manchester, Sch Earth & Environm Sci, Michael Smith Bldg,Oxford Rd, Manchester M13 9PT, Lancs, England
[8] Western Sydney Univ, Hawkesbury Inst Environm, Penrith, NSW 2751, Australia
[9] Western Sydney Univ, Global Ctr Land Based Innovat, Penrith, NSW 2751, Australia
基金
欧盟地平线“2020”; 英国生物技术与生命科学研究理事会; 美国国家科学基金会; 澳大利亚研究理事会; 欧洲研究理事会;
关键词
16S RIBOSOMAL-RNA; SPECIES DEFINITION; PLANT DIVERSITY; GRASSLANDS; MICROBES;
D O I
10.1126/science.aap9516
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The immense diversity of soil bacterial communities has stymied efforts to characterize individual taxa and document their global distributions. We analyzed soils from 237 locations across six continents and found that only 2% of bacterial phylotypes (similar to 500 phylotypes) consistently accounted for almost half of the soil bacterial communities worldwide. Despite the overwhelming diversity of bacterial communities, relatively few bacterial taxa are abundant in soils globally. We clustered these dominant taxa into ecological groups to build the first global atlas of soil bacterial taxa. Our study narrows down the immense number of bacterial taxa to a "most wanted" list that will be fruitful targets for genomic and cultivation-based efforts aimed at improving our understanding of soil microbes and their contributions to ecosystem functioning.
引用
收藏
页码:320 / +
页数:6
相关论文
共 28 条
[21]   Locally rare species influence grassland ecosystem multifunctionality [J].
Soliveres, Santiago ;
Manning, Peter ;
Prati, Daniel ;
Gossner, Martin M. ;
Alt, Fabian ;
Arndt, Hartmut ;
Baumgartner, Vanessa ;
Binkenstein, Julia ;
Birkhofer, Klaus ;
Blaser, Stefan ;
Bluethgen, Nico ;
Boch, Steffen ;
Boehm, Stefan ;
Boerschig, Carmen ;
Buscot, Francois ;
Diekoetter, Tim ;
Heinze, Johannes ;
Hoelzel, Norbert ;
Jung, Kirsten ;
Klaus, Valentin H. ;
Klein, Alexandra-Maria ;
Kleinebecker, Till ;
Klemmer, Sandra ;
Krauss, Jochen ;
Lange, Markus ;
Morris, E. Kathryn ;
Mueller, Joerg ;
Oelmann, Yvonne ;
Overmann, Joerg ;
Pasalic, Esther ;
Renner, Swen C. ;
Rillig, Matthias C. ;
Schaefer, H. Martin ;
Schloter, Michael ;
Schmitt, Barbara ;
Schoening, Ingo ;
Schrumpf, Marion ;
Sikorski, Johannes ;
Socher, Stephanie A. ;
Solly, Emily F. ;
Sonnemann, Ilja ;
Sorkau, Elisabeth ;
Steckel, Juliane ;
Steffan-Dewenter, Ingolf ;
Stempfhuber, Barbara ;
Tschapka, Marco ;
Tuerke, Manfred ;
Venter, Paul ;
Weiner, Christiane N. ;
Weisser, Wolfgang W. .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 2016, 371 (1694)
[22]   A PLACE FOR DNA-DNA REASSOCIATION AND 16S RIBOSOMAL-RNA SEQUENCE-ANALYSIS IN THE PRESENT SPECIES DEFINITION IN BACTERIOLOGY [J].
STACKEBRANDT, E ;
GOEBEL, BM .
INTERNATIONAL JOURNAL OF SYSTEMATIC BACTERIOLOGY, 1994, 44 (04) :846-849
[23]   The Mrp system: a giant among monovalent cation/proton antiporters? [J].
Swartz, TH ;
Ikewada, S ;
Ishikawa, O ;
Ito, M ;
Krulwich, TA .
EXTREMOPHILES, 2005, 9 (05) :345-354
[24]   Collect reliable data on embryo selection [J].
Thompson, Charis .
NATURE, 2017, 551 (7678) :33-33
[25]   Opening the black box of soil microbial diversity [J].
Tiedje, JM ;
Asuming-Brempong, S ;
Nüsslein, K ;
Marsh, TL ;
Flynn, SJ .
APPLIED SOIL ECOLOGY, 1999, 13 (02) :109-122
[26]   Non-symbiotic Bradyrhizobium ecotypes dominate North American forest soils [J].
VanInsberghe, David ;
Maas, Kendra R. ;
Cardenas, Erick ;
Strachan, Cameron R. ;
Hallam, Steven J. ;
Mohn, William W. .
ISME JOURNAL, 2015, 9 (11) :2435-2441
[27]  
Whitford W., 2002, Ecology of Desert Systems
[28]   Temperature mediates continental-scale diversity of microbes in forest soils [J].
Zhou, Jizhong ;
Deng, Ye ;
Shen, Lina ;
Wen, Chongqing ;
Yan, Qingyun ;
Ning, Daliang ;
Qin, Yujia ;
Xue, Kai ;
Wu, Liyou ;
He, Zhili ;
Voordeckers, James W. ;
Van Nostrand, Joy D. ;
Buzzard, Vanessa ;
Michaletz, Sean T. ;
Enquist, Brian J. ;
Weiser, Michael D. ;
Kaspari, Michael ;
Waide, Robert ;
Yang, Yunfeng ;
Brown, James H. .
NATURE COMMUNICATIONS, 2016, 7