800000 year old mammoth DNA, modern elephant DNA or PCR artefact?

被引:10
作者
Binladen, Jonas
Gilbert, M. Thomas P.
Willerslev, Eske
机构
[1] Univ Copenhagen, Niels Bohr Inst, Ctr Ancient Genet, DK-2100 Copenhagen, Denmark
[2] Univ Copenhagen, Inst Biol, DK-2100 Copenhagen, Denmark
基金
英国惠康基金;
关键词
ancient DNA; mammoths; taxonomy; nested PCR; Crete; ANCIENT DNA; HISTORY; DECAY; ICE;
D O I
10.1098/rsbl.2006.0537
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Poulakakis and colleagues (Poulakakis et al. 2006: Biol. Lett. 2, 451 - 454), report the recovery of 'authentic' mammoth DNA from an 800 000 year-old fragment of bone excavated on the island of Crete. In light of results from other ancient DNA studies that indicate how DNA survival is unlikely in samples, which are recovered from warm environments and are relatively old (e. g. more than 100 000 years), these findings come as a great surprise. Here, we show that problems exist with the methodological approaches used in the study. First, the nested PCR technique as reported is nonsensical - one of the second round 'nested' primers falls outside the amplicon of the first round PCR. More worryingly, the binding region of one of the first round primers (Elcytb320R) falls within the short 43 base pair reported mammoth sequence, specifically covering two of the three reportedly diagnostic Elephas polymorphisms. Finally, we demonstrate using a simple BLAST search in GenBank that the claimed 'uniquely derived character state' for mammoths is in fact also found within modern elephants.
引用
收藏
页码:55 / 56
页数:2
相关论文
共 17 条
[1]  
Cooper A, 2000, SCIENCE, V289, P1139
[2]   Assessing ancient DNA studies [J].
Gilbert, MTP ;
Bandelt, HJ ;
Hofreiter, M ;
Barnes, I .
TRENDS IN ECOLOGY & EVOLUTION, 2005, 20 (10) :541-544
[3]   Long-term survival of ancient DNA in Egypt: Response to Zink and Nerlich (2003) [J].
Gilbert, MTP ;
Barnes, I ;
Collins, MJ ;
Smith, C ;
Eklund, J ;
Goudsmit, J ;
Poinar, H ;
Cooper, A .
AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, 2005, 128 (01) :110-114
[4]   MOLECULAR-GENETIC ANALYSES OF THE TYROLEAN ICE MAN [J].
HANDT, O ;
RICHARDS, M ;
TROMMSDORFF, M ;
KILGER, C ;
SIMANAINEN, J ;
GEORGIEV, O ;
BAUER, K ;
STONE, A ;
HEDGES, R ;
SCHAFFNER, W ;
UTERMANN, G ;
SYKES, B ;
PAABO, S .
SCIENCE, 1994, 264 (5166) :1775-1778
[5]   Geologically ancient DNA: fact or artefact? [J].
Hebsgaard, MB ;
Phillips, MJ ;
Willerslev, E .
TRENDS IN MICROBIOLOGY, 2005, 13 (05) :212-220
[6]  
Kumar SS, 2000, AM J PHYS ANTHROPOL, V113, P129, DOI 10.1002/1096-8644(200009)113:1<129::AID-AJPA12>3.0.CO
[7]  
2-2
[8]   INSTABILITY AND DECAY OF THE PRIMARY STRUCTURE OF DNA [J].
LINDAHL, T .
NATURE, 1993, 362 (6422) :709-715
[9]   DNA decay rate in papyri and human remains from Egyptian archaeological sites [J].
Marota, I ;
Basile, C ;
Ubaldi, M ;
Rollo, F .
AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, 2002, 117 (04) :310-318
[10]  
MATZARAKIS A, 2005, ANN METEOROL, V2, P616