Nonrandom representation of sex-biased genes on chicken Z chromosome

被引:53
作者
Storchova, R.
Divina, P.
机构
[1] Acad Sci Czech Republ, Inst Mol Genet, CZ-14220 Prague 4, Czech Republic
[2] Ctr Appl Genom, CZ-14220 Prague 4, Czech Republic
关键词
comparative genomics; chicken; dosage compensation; evolution; gene expression; sex chromosomes; Z chromosome;
D O I
10.1007/s00239-006-0022-1
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Several lines of evidence suggest that the X chromosome of various animal species has an unusual complement of genes with sex-biased or sex-specific expression. However, the study of the X chromosome gene content in different organisms provided conflicting results. The most striking contrast concerns the male-biased genes, which were reported to be almost depleted from the X chromosome in Drosophila but overrepresented on the X chromosome in mammals. To elucidate the reason for these discrepancies, we analysed the gene content of the Z chromosome in chicken. Our analysis of the publicly available expressed sequence tags (EST) data and genome draft sequence revealed a significant underrepresentation of ovary-specific genes on the chicken Z chromosome. For the brain-expressed genes, we found a significant enrichment of male-biased genes but an indication of underrepresentation of female-biased genes on the Z chromosome. This is the first report on the nonrandom gene content in a homogametic sex chromosome of a species with heterogametic female individuals. Further comparison of gene contents of the independently evolved X and Z sex chromosomes may offer new insight into the evolutionary processes leading to the nonrandom genomic distribution of sex-biased and sex-specific genes.
引用
收藏
页码:676 / 681
页数:6
相关论文
共 36 条
[11]  
Gupta Vaijayanti, 2006, J Biol, V5, P3, DOI 10.1186/jbiol30
[12]   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution [J].
Hillier, LW ;
Miller, W ;
Birney, E ;
Warren, W ;
Hardison, RC ;
Ponting, CP ;
Bork, P ;
Burt, DW ;
Groenen, MAM ;
Delany, ME ;
Dodgson, JB ;
Chinwalla, AT ;
Cliften, PF ;
Clifton, SW ;
Delehaunty, KD ;
Fronick, C ;
Fulton, RS ;
Graves, TA ;
Kremitzki, C ;
Layman, D ;
Magrini, V ;
McPherson, JD ;
Miner, TL ;
Minx, P ;
Nash, WE ;
Nhan, MN ;
Nelson, JO ;
Oddy, LG ;
Pohl, CS ;
Randall-Maher, J ;
Smith, SM ;
Wallis, JW ;
Yang, SP ;
Romanov, MN ;
Rondelli, CM ;
Paton, B ;
Smith, J ;
Morrice, D ;
Daniels, L ;
Tempest, HG ;
Robertson, L ;
Masabanda, JS ;
Griffin, DK ;
Vignal, A ;
Fillon, V ;
Jacobbson, L ;
Kerje, S ;
Andersson, L ;
Crooijmans, RPM ;
Aerts, J .
NATURE, 2004, 432 (7018) :695-716
[13]   An eXceptional chromosome [J].
Hurst, LD ;
Randerson, JP .
TRENDS IN GENETICS, 1999, 15 (10) :383-385
[14]   Evolutionary genomics - Sex and the X [J].
Hurst, LD .
NATURE, 2001, 411 (6834) :149-150
[15]   THE EVOLUTION OF HETEROMORPHIC SEX-CHROMOSOMES [J].
JABLONKA, E ;
LAMB, MJ .
BIOLOGICAL REVIEWS, 1990, 65 (03) :249-276
[16]   The UCSC Genome Browser Database [J].
Karolchik, D ;
Baertsch, R ;
Diekhans, M ;
Furey, TS ;
Hinrichs, A ;
Lu, YT ;
Roskin, KM ;
Schwartz, M ;
Sugnet, CW ;
Thomas, DJ ;
Weber, RJ ;
Haussler, D ;
Kent, WJ .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :51-54
[17]   Path to equality strewn with roX [J].
Kelley, RL .
DEVELOPMENTAL BIOLOGY, 2004, 269 (01) :18-25
[18]  
Kent WJ, 2002, GENOME RES, V12, P656, DOI [10.1101/gr.229202, 10.1101/gr.229202. Article published online before March 2002]
[19]   X for intersection: retrotransposition both on and off the X chromosome is more frequent [J].
Khil, PP ;
Oliver, B ;
Camerini-Otero, RD .
TRENDS IN GENETICS, 2005, 21 (01) :3-7
[20]   The mouse X chromosome is enriched for sex-biased genes not subject to selection by meiotic sex chromosome inactivation [J].
Khil, PP ;
Smirnova, NA ;
Romanienko, PJ ;
Camerini-Otero, RD .
NATURE GENETICS, 2004, 36 (06) :642-646