Nonsense-mediated mRNA decay: target genes and functional diversification of effectors

被引:116
作者
Rehwinkel, Jan
Raes, Jeroen
Izaurralde, Elisa
机构
[1] European Mol Biol Lab, D-69117 Heidelberg, Germany
[2] MPI Dev Biol, D-72076 Tubingen, Germany
关键词
D O I
10.1016/j.tibs.2006.09.005
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Recent genome-wide identification of nonsensemediated mRNA decay (NMD) targets in yeast, fruitfly and human cells has provided insight into the biological functions and evolution of this mRNA quality control mechanism, revealing that NMD post-transcriptionally regulates an important fraction of the transcriptome. NMD targets are associated with a broad range of biological processes, but most of these targets are not encoded by orthologous genes across different species. Yeast and fruitfly NMD effectors regulate common targets in concert, but parallel pathways have evolved in humans, whereby NMD effectors have acquired additional functions. Thus, the phenotypic differences observed across species after inhibition of NMD are driven not only by the functional diversification of NMD effectors but also by changes in the repertoire of regulated genes.
引用
收藏
页码:639 / 646
页数:8
相关论文
共 70 条
[21]   Y14 and hUpf3b form an NMD-activating complex [J].
Gehring, NH ;
Neu-Yilik, G ;
Schell, T ;
Hentze, MW ;
Kulozik, AE .
MOLECULAR CELL, 2003, 11 (04) :939-949
[22]   SMG-1 is a phosphatidylinositol kinase-related protein kinase required for nonsense-mediated mRNA decay in Caenorhabditis elegans [J].
Grimson, A ;
O'Connor, S ;
Newman, CL ;
Anderson, P .
MOLECULAR AND CELLULAR BIOLOGY, 2004, 24 (17) :7483-7490
[23]   Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5′ to 3′ mRNA decay pathways in yeast [J].
He, F ;
Li, XR ;
Spatrick, P ;
Casillo, R ;
Dong, SY ;
Jacobson, A .
MOLECULAR CELL, 2003, 12 (06) :1439-1452
[24]   mRNA surveillance in eukaryotes: Kinetic proofreading of proper translation termination as assessed by mRNP domain organization? [J].
Hilleren, P ;
Parker, R .
RNA, 1999, 5 (06) :711-719
[25]   Eukaryotic gene regulation by targeted chromatin re-modeling at dispersed, middle-repetitive sequence elements [J].
Hodgetts, R .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2004, 14 (06) :680-685
[26]  
HODGKIN J, 1989, GENETICS, V123, P301
[27]   Nonsense-mediated decay approaches the clinic [J].
Holbrook, JA ;
Neu-Yilik, G ;
Hentze, MW ;
Kulozik, AE .
NATURE GENETICS, 2004, 36 (08) :801-808
[28]   Evidence for a pioneer round of mRNA translation: mRNAs subject to nonsense-mediated decay in mammalian cells are bound by CBP80 and CBP20 [J].
Ishigaki, Y ;
Li, XJ ;
Serin, G ;
Maquat, LE .
CELL, 2001, 106 (05) :607-617
[29]   Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay [J].
Kashima, I ;
Yamashita, A ;
Izumi, N ;
Kataoka, N ;
Morishita, R ;
Hoshino, S ;
Ohno, M ;
Dreyfuss, G ;
Ohno, S .
GENES & DEVELOPMENT, 2006, 20 (03) :355-367
[30]   Regulated degradation of replication-dependent histone mRNAs requires both ATR and Upf1 [J].
Kaygun, H ;
Marzluff, WF .
NATURE STRUCTURAL & MOLECULAR BIOLOGY, 2005, 12 (09) :794-800