Incomplete penetrance and variable expressivity: is there a microRNA connection?

被引:27
作者
Ahluwalia, Jasmine K. [1 ,2 ]
Hariharan, Manoj [2 ]
Bargaje, Rhishikesh [2 ]
Pillai, Beena [2 ]
Brahmachari, Vani [1 ]
机构
[1] Univ Delhi, Dr BR Ambedkar Ctr Biomed Res, Delhi 110007, India
[2] CSIR, Inst Genom & Integrat Biol, Delhi, India
关键词
epigenetics; incomplete penetrance; MicroRNA; modifier; variable expressivity; TRANSCRIPTIONAL REGULATION; GENE-EXPRESSION; MESSENGER-RNA; VAS-DEFERENS; TARGETS; ALLELE; MUTATIONS; METHYLATION; PREDICTION; IDENTIFICATION;
D O I
10.1002/bies.200900066
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Incomplete penetrance and variable expressivity are non-Mendelian phenomena resulting in the lack of correlation between genotype and phenotype. Not withstanding the diversity in mechanisms, differential expression of homologous alleles within cells manifests as variations in penetrance and expressivity of mutations between individuals of the same genotype. These phenomena are seen most often in dominantly inherited diseases, implying that they are sensitive to concentration of the gene product. In this framework and the advances in understanding the role of microRNA (miRNA) in fine-tuning gene expression at translational level, we propose miRNA-mediated regulation as a mechanism for incomplete penetrance and variable expressivity. The presence of miRNA binding sites at 3' UTR, co-expression of target gene-miRNA pairs for genes showing incomplete penetrance and variable expressivity derived from available data lend support to our hypothesis. Single nucleotide polymorphisms in the miRNA target site facilitate the implied differential targeting of the transcripts from homologous alleles.
引用
收藏
页码:981 / 992
页数:12
相关论文
共 77 条
[21]   VARIATION OF THE CGG REPEAT AT THE FRAGILE-X SITE RESULTS IN GENETIC INSTABILITY - RESOLUTION OF THE SHERMAN PARADOX [J].
FU, YH ;
KUHL, DPA ;
PIZZUTI, A ;
PIERETTI, M ;
SUTCLIFFE, JS ;
RICHARDS, S ;
VERKERK, AJMH ;
HOLDEN, JJA ;
FENWICK, RG ;
WARREN, ST ;
OOSTRA, BA ;
NELSON, DL ;
CASKEY, CT .
CELL, 1991, 67 (06) :1047-1058
[22]   Repeat-induced gene silencing in mammals [J].
Garrick, D ;
Fiering, S ;
Martin, DIK ;
Whitelaw, E .
NATURE GENETICS, 1998, 18 (01) :56-59
[23]   Polymorphic miRNA-mediated gene regulation: contribution to phenotypic variation and disease [J].
Georges, Michel ;
Coppieters, Wouter ;
Charlier, Carole .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2007, 17 (03) :166-176
[24]   The penetrance of dominant erythropoietic protoporphyria is modulated by expression of wildtype FECH [J].
Gouya, L ;
Puy, H ;
Robreau, AM ;
Bourgeois, M ;
Lamoril, J ;
Da Silva, V ;
Grandchamp, B ;
Deybach, JC .
NATURE GENETICS, 2002, 30 (01) :27-28
[25]   Asynchronous replication timing of imprinted loci is independent of DNA methylation, but consistent with differential subnuclear localization [J].
Gribnau, J ;
Hochedlinger, K ;
Hata, K ;
Li, E ;
Jaenisch, R .
GENES & DEVELOPMENT, 2003, 17 (06) :759-773
[26]   miRBase: microRNA sequences, targets and gene nomenclature [J].
Griffiths-Jones, Sam ;
Grocock, Russell J. ;
van Dongen, Stijn ;
Bateman, Alex ;
Enright, Anton J. .
NUCLEIC ACIDS RESEARCH, 2006, 34 :D140-D144
[27]   HIGH FUNCTIONING FRAGILE-X MALES - DEMONSTRATION OF AN UNMETHYLATED FULLY EXPANDED FMR-1 MUTATION ASSOCIATED WITH PROTEIN EXPRESSION [J].
HAGERMAN, RJ ;
HULL, CE ;
SAFANDA, JF ;
CARPENTER, I ;
STALEY, LW ;
OCONNOR, RA ;
SEYDEL, C ;
MAZZOCCO, MMM ;
SNOW, K ;
THIBODEAU, SN ;
KUHL, D ;
NELSON, DL ;
CASKEY, CT ;
TAYLOR, AK .
AMERICAN JOURNAL OF MEDICAL GENETICS, 1994, 51 (04) :298-308
[28]   Targets for human encoded mircoRNAs in HIV genes [J].
Hariharan, M ;
Scaria, V ;
Pillai, B ;
Brahmachari, SK .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 2005, 337 (04) :1214-1218
[29]   dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation [J].
Hariharan, Manoj ;
Scaria, Vinod ;
Brahmachari, Samir K. .
BMC BIOINFORMATICS, 2009, 10
[30]   CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus [J].
Hark, AT ;
Schoenherr, CJ ;
Katz, DJ ;
Ingram, RS ;
Levorse, JM ;
Tilghman, SM .
NATURE, 2000, 405 (6785) :486-489