Transcription Dynamics

被引:395
作者
Hager, Gordon L. [1 ]
McNally, James G. [1 ]
Misteli, Tom [1 ]
机构
[1] NCI, NIH, Bethesda, MD 20892 USA
关键词
RNA-POLYMERASE-II; EMBRYONIC STEM-CELLS; ESTROGEN-RECEPTOR-ALPHA; BETA-GLOBIN LOCUS; TATA-BINDING PROTEIN; INTERACTIONS IN-VIVO; GLUCOCORTICOID-RECEPTOR; LIVING CELLS; GENE-EXPRESSION; ANDROGEN RECEPTOR;
D O I
10.1016/j.molcel.2009.09.005
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
All aspects of transcription and its regulation involve dynamic events. The basal transcription machinery and regulatory components are dynamically recruited to their target genes, and dynamic interactions of transcription factors with chromatin-and with each other-play a key role in RNA polymerase assembly, initiation, and elongation. These short-term binding dynamics of transcription factors are superimposed by long-term cyclical behavior of chromatin opening and transcription factor-binding events. Its dynamic nature is not only a fundamental property of the transcription machinery, but it is emerging as an important modulator of physiological processes, particularly in differentiation and development.
引用
收藏
页码:741 / 753
页数:13
相关论文
共 110 条
[1]
Nucleosome remodeling by the human SWI/SNF complex requires transient global disruption of histone-DNA interactions [J].
Aoyagi, S ;
Narlikar, G ;
Zheng, CY ;
Sif, S ;
Kingston, RE ;
Hayes, JJ .
MOLECULAR AND CELLULAR BIOLOGY, 2002, 22 (11) :3653-3662
[2]
More than 40,000 transcripts, including novel and noncoding transcripts, in mouse embryonic stem cells [J].
Araki, Ryoko ;
Fukumura, Ryutaro ;
Sasaki, Naokazu ;
Kasama, Yasuji ;
Suzuki, Nobuko ;
Takahashi, Hirokazu ;
Tabata, Yoshimichi ;
Saito, Toshiyuki ;
Abe, Masumi .
STEM CELLS, 2006, 24 (11) :2522-2528
[3]
Molecular analysis of the SNF2/SWI2 protein family member MOT1, an ATP-driven enzyme that dissociates TATA-binding protein from DNA [J].
Auble, DT ;
Wang, DY ;
Post, KW ;
Hahn, S .
MOLECULAR AND CELLULAR BIOLOGY, 1997, 17 (08) :4842-4851
[4]
Chromatin signatures of pluripotent cell lines [J].
Azuara, V ;
Perry, P ;
Sauer, S ;
Spivakov, M ;
Jorgensen, HF ;
John, RM ;
Gouti, M ;
Casanova, M ;
Warnes, G ;
Merkenschlager, M ;
Fisher, AG .
NATURE CELL BIOLOGY, 2006, 8 (05) :532-U189
[5]
Dynamic behavior of transcription factors on a natural promoter in living cells [J].
Becker, M ;
Baumann, C ;
John, S ;
Walker, DA ;
Vigneron, M ;
McNally, JG ;
Hager, GL .
EMBO REPORTS, 2002, 3 (12) :1188-1194
[6]
Nucleosome sliding: facts and fiction [J].
Becker, PB .
EMBO JOURNAL, 2002, 21 (18) :4749-4753
[7]
HYPOPHYSEAL RESPONSES TO CONTINUOUS AND INTERMITTENT DELIVERY OF HYPOTHALAMIC GONADOTROPIN-RELEASING HORMONE [J].
BELCHETZ, PE ;
PLANT, TM ;
NAKAI, Y ;
KEOGH, EJ ;
KNOBIL, E .
SCIENCE, 1978, 202 (4368) :631-633
[8]
A bivalent chromatin structure marks key developmental genes in embryonic stem cells [J].
Bernstein, BE ;
Mikkelsen, TS ;
Xie, XH ;
Kamal, M ;
Huebert, DJ ;
Cuff, J ;
Fry, B ;
Meissner, A ;
Wernig, M ;
Plath, K ;
Jaenisch, R ;
Wagschal, A ;
Feil, R ;
Schreiber, SL ;
Lander, ES .
CELL, 2006, 125 (02) :315-326
[9]
GENE NUMBER, NOISE-REDUCTION AND BIOLOGICAL COMPLEXITY [J].
BIRD, AP .
TRENDS IN GENETICS, 1995, 11 (03) :94-100
[10]
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [J].
Birney, Ewan ;
Stamatoyannopoulos, John A. ;
Dutta, Anindya ;
Guigo, Roderic ;
Gingeras, Thomas R. ;
Margulies, Elliott H. ;
Weng, Zhiping ;
Snyder, Michael ;
Dermitzakis, Emmanouil T. ;
Stamatoyannopoulos, John A. ;
Thurman, Robert E. ;
Kuehn, Michael S. ;
Taylor, Christopher M. ;
Neph, Shane ;
Koch, Christoph M. ;
Asthana, Saurabh ;
Malhotra, Ankit ;
Adzhubei, Ivan ;
Greenbaum, Jason A. ;
Andrews, Robert M. ;
Flicek, Paul ;
Boyle, Patrick J. ;
Cao, Hua ;
Carter, Nigel P. ;
Clelland, Gayle K. ;
Davis, Sean ;
Day, Nathan ;
Dhami, Pawandeep ;
Dillon, Shane C. ;
Dorschner, Michael O. ;
Fiegler, Heike ;
Giresi, Paul G. ;
Goldy, Jeff ;
Hawrylycz, Michael ;
Haydock, Andrew ;
Humbert, Richard ;
James, Keith D. ;
Johnson, Brett E. ;
Johnson, Ericka M. ;
Frum, Tristan T. ;
Rosenzweig, Elizabeth R. ;
Karnani, Neerja ;
Lee, Kirsten ;
Lefebvre, Gregory C. ;
Navas, Patrick A. ;
Neri, Fidencio ;
Parker, Stephen C. J. ;
Sabo, Peter J. ;
Sandstrom, Richard ;
Shafer, Anthony .
NATURE, 2007, 447 (7146) :799-816