Human-mouse comparative genomics: Successes and failures to reveal functional regions of the human genome

被引：3

作者：

Pennacchio, LA

Baroukh, N

Rubin, EM

机构：

[1] Univ Calif Berkeley, Lawrence Berkeley Lab, Genome Sci Dept, Berkeley, CA 94720 USA

[2] US Dept Energy Joint Genome Inst, Walnut Creek, CA 94598 USA

来源：

COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY | 2003年 / 68卷

关键词：

D O I：

10.1101/sqb.2003.68.303

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

引用

页码：303 / 309

页数：7

共 29 条

[1] Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes [J].

Aparicio, S ;

Chapman, J ;

Stupka, E ;

Putnam, N ;

Chia, J ;

Dehal, P ;

Christoffels, A ;

Rash, S ;

Hoon, S ;

Smit, A ;

Gelpke, MDS ;

Roach, J ;

Oh, T ;

Ho, IY ;

Wong, M ;

Detter, C ;

Verhoef, F ;

Predki, P ;

Tay, A ;

Lucas, S ;

Richardson, P ;

Smith, SF ;

Clark, MS ;

Edwards, YJK ;

Doggett, N ;

Zharkikh, A ;

Tavtigian, SV ;

Pruss, D ;

Barnstead, M ;

Evans, C ;

Baden, H ;

Powell, J ;

Glusman, G ;

Rowen, L ;

Hood, L ;

Tan, YH ;

Elgar, G ;

Hawkins, T ;

Venkatesh, B ;

Rokhsar, D ;

Brenner, S .

SCIENCE, 2002, 297 (5585) :1301-1310

[2] Comparative genomics of the SOX9 region in human and Fugu rubripes:: Conservation of short regulatory sequence elements within large intergenic regions [J].

Bagheri-Fam, S ;

Ferraz, C ;

Demaille, J ;

Scherer, G ;

Pfeifer, D .

GENOMICS, 2001, 78 (1-2) :73-82

[3] Phylogenetic shadowing of primate sequences to find functional regions of the human genome [J].

Boffelli, D ;

McAuliffe, J ;

Ovcharenko, D ;

Lewis, KD ;

Ovcharenko, I ;

Pachter, L ;

Rubin, EM .

SCIENCE, 2003, 299 (5611) :1391-1394

[4] Comparative genomics: The mouse that roared [J].

Boguski, MS .

NATURE, 2002, 420 (6915) :515-516

[5] Quantitative estimates of sequence divergence for comparative analyses of mammalian genomes [J].

Cooper, GM ;

Brudno, M ;

Green, ED ;

Batzoglou, S ;

Sidow, A .

GENOME RESEARCH, 2003, 13 (05) :813-820

[6] Strategies and tools for whole-genome alignments [J].

Couronne, O ;

Poliakov, A ;

Bray, N ;

Ishkhanov, T ;

Ryaboy, D ;

Rubin, E ;

Pachter, L ;

Dubchak, I .

GENOME RESEARCH, 2003, 13 (01) :73-80

[7] The draft genome of Ciona intestinalis:: Insights into chordate and vertebrate origins [J].

Dehal, P ;

Satou, Y ;

Campbell, RK ;

Chapman, J ;

Degnan, B ;

De Tomaso, A ;

Davidson, B ;

Di Gregorio, A ;

Gelpke, M ;

Goodstein, DM ;

Harafuji, N ;

Hastings, KEM ;

Ho, I ;

Hotta, K ;

Huang, W ;

Kawashima, T ;

Lemaire, P ;

Martinez, D ;

Meinertzhagen, IA ;

Necula, S ;

Nonaka, M ;

Putnam, N ;

Rash, S ;

Saiga, H ;

Satake, M ;

Terry, A ;

Yamada, L ;

Wang, HG ;

Awazu, S ;

Azumi, K ;

Boore, J ;

Branno, M ;

Chin-bow, S ;

DeSantis, R ;

Doyle, S ;

Francino, P ;

Keys, DN ;

Haga, S ;

Hayashi, H ;

Hino, K ;

Imai, KS ;

Inaba, K ;

Kano, S ;

Kobayashi, K ;

Kobayashi, M ;

Lee, BI ;

Makabe, KW ;

Manohar, C ;

Matassi, G ;

Medina, M .

SCIENCE, 2002, 298 (5601) :2157-2167

[8] Searching for regulatory elements in human noncoding sequences [J].

Duret, L ;

Bucher, P .

CURRENT OPINION IN STRUCTURAL BIOLOGY, 1997, 7 (03) :399-406

[9] THE APOLIPOPROTEIN(A) GENE IS REGULATED BY SEX-HORMONES AND ACUTE-PHASE INDUCERS IN YAC TRANSGENIC MICE [J].

FRAZER, KA ;

NARLA, G ;

ZHANG, JL ;

RUBIN, EM .

NATURE GENETICS, 1995, 9 (04) :424-431

[10] Cross-species sequence comparisons: A review of methods and available resources [J].

Frazer, KA ;

Elnitski, L ;

Church, DM ;

Dubchak, I ;

Hardison, RC .

GENOME RESEARCH, 2003, 13 (01) :1-12

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