Cryo-EM Structure of a Fully Glycosylated Soluble Cleaved HIV-1 Envelope Trimer

被引:573
作者
Lyumkis, Dmitry [1 ,2 ]
Julien, Jean-Philippe [2 ,3 ,4 ]
de Val, Natalia [2 ,3 ]
Cupo, Albert [5 ]
Potter, Clinton S. [1 ,2 ]
Klasse, Per-Johan [5 ]
Burton, Dennis R. [3 ,6 ,7 ,8 ]
Sanders, Rogier W. [5 ,9 ]
Moore, John P. [5 ]
Carragher, Bridget [1 ,2 ]
Wilson, Ian A. [2 ,3 ,4 ,6 ]
Ward, Andrew B. [2 ,3 ,6 ]
机构
[1] Scripps Res Inst, Natl Resource Automated Mol Microscopy, La Jolla, CA 92037 USA
[2] Scripps Res Inst, Dept Integrat Struct & Computat Biol, La Jolla, CA 92037 USA
[3] Scripps Res Inst, Ctr HIV AIDS Vaccine Immunol & Immunogen Discover, La Jolla, CA 92037 USA
[4] Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA
[5] Cornell Univ, Weill Med Coll, York, NY 10021 USA
[6] Scripps Res Inst, Neutralizing Antibody Ctr, Int AIDS Vaccine Initiat IAVI, La Jolla, CA 92037 USA
[7] Scripps Res Inst, Dept Immunol & Microbial Sci, La Jolla, CA 92037 USA
[8] Ragon Inst MGH MIT & Harvard, Cambridge, MA 02129 USA
[9] Univ Amsterdam, Acad Med Ctr, Dept Med Microbiol, NL-1105 AZ Amsterdam, Netherlands
基金
加拿大健康研究院; 欧洲研究理事会;
关键词
NEUTRALIZING ANTIBODIES; MOLECULAR ARCHITECTURE; GLYCOPROTEIN COMPLEX; CRYSTAL-STRUCTURE; GP120; VIRUS; RESOLUTION; RECOGNITION; DISPLAY; BINDING;
D O I
10.1126/science.1245627
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The HIV-1 envelope glycoprotein (Env) trimer contains the receptor binding sites and membrane fusion machinery that introduce the viral genome into the host cell. As the only target for broadly neutralizing antibodies (bnAbs), Env is a focus for rational vaccine design. We present a cryo-electron microscopy reconstruction and structural model of a cleaved, soluble Env trimer (termed BG505 SOSIP.664 gp140) in complex with a CD4 binding site (CD4bs) bnAb, PGV04, at 5.8 angstrom resolution. The structure reveals the spatial arrangement of Env components, including the V1/V2, V3, HR1, and HR2 domains, as well as shielding glycans. The structure also provides insights into trimer assembly, gp120-gp41 interactions, and the CD4bs epitope cluster for bnAbs, which covers a more extensive area and defines a more complex site of vulnerability than previously described.
引用
收藏
页码:1484 / 1490
页数:7
相关论文
共 51 条
[1]   A recombinant human immunodeficiency virus type 1 envelope glycoprotein complex stabilized by an intermolecular disulfide bond between the gp120 and gp41 subunits is an antigenic mimic of the trimeric virion-associated structure [J].
Binley, JM ;
Sanders, RW ;
Clas, B ;
Schuelke, N ;
Master, A ;
Guo, Y ;
Kajumo, F ;
Anselma, DJ ;
Maddon, PJ ;
Olson, WC ;
Moore, JP .
JOURNAL OF VIROLOGY, 2000, 74 (02) :627-643
[2]   Movies of Ice-Embedded Particles Enhance Resolution in Electron Cryo-Microscopy [J].
Campbell, Melody G. ;
Cheng, Anchi ;
Brilot, Axel F. ;
Moeller, Arne ;
Lyumkis, Dmitry ;
Veesler, David ;
Pan, Junhua ;
Harrison, Stephen C. ;
Potter, Clinton S. ;
Carragher, Bridget ;
Grigorieff, Nikolaus .
STRUCTURE, 2012, 20 (11) :1823-1828
[3]   Structural Basis of Immune Evasion at the Site of CD4 Attachment on HIV-1 gp120 [J].
Chen, Lei ;
Kwon, Young Do ;
Zhou, Tongqing ;
Wu, Xueling ;
O'Dell, Sijy ;
Cavacini, Lisa ;
Hessell, Ann J. ;
Pancera, Marie ;
Tang, Min ;
Xu, Ling ;
Yang, Zhi-Yong ;
Zhang, Mei-Yun ;
Arthos, James ;
Burton, Dennis R. ;
Dimitrov, Dimiter S. ;
Nabel, Gary J. ;
Posner, Marshall R. ;
Sodroski, Joseph ;
Wyatt, Richard ;
Mascola, John R. ;
Kwong, Peter D. .
SCIENCE, 2009, 326 (5956) :1123-1127
[4]   High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy [J].
Chen, Shaoxia ;
McMullan, Greg ;
Faruqi, Abdul R. ;
Murshudov, Garib N. ;
Short, Judith M. ;
Scheres, Sjors H. W. ;
Henderson, Richard .
ULTRAMICROSCOPY, 2013, 135 :24-35
[5]   STRUCTURAL BIOLOGY Is High-Tech View of HIV Too Good to Be True? [J].
Cohen, Jon .
SCIENCE, 2013, 341 (6145) :443-444
[6]   Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops [J].
Do Kwon, Young ;
Finzi, Andres ;
Wu, Xueling ;
Dogo-Isonagie, Cajetan ;
Lee, Lawrence K. ;
Moore, Lucas R. ;
Schmidt, Stephen D. ;
Stuckey, Jonathan ;
Yang, Yongping ;
Zhou, Tongqing ;
Zhu, Jiang ;
Vicic, David A. ;
Debnath, Asim K. ;
Shapiro, Lawrence ;
Bewley, Carole A. ;
Mascola, John R. ;
Sodroski, Joseph G. ;
Kwong, Peter D. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2012, 109 (15) :5663-5668
[7]   Trimeric HIV-1 glycoprotein gp140 immunogens and native HIV-1 envelope glycoproteins display the same closed and open quaternary molecular architectures [J].
Harris, Audray ;
Borgnia, Mario J. ;
Shi, Dan ;
Bartesaghi, Alberto ;
He, Haifeng ;
Pejchal, Robert ;
Kang, Yun ;
Depetris, Rafael ;
Marozsan, Andre J. ;
Sanders, Rogier W. ;
Klasse, Per Johan ;
Milne, Jacqueline L. S. ;
Wilson, Ian A. ;
Olson, William C. ;
Moore, John P. ;
Subramaniam, Sriram .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2011, 108 (28) :11440-11445
[8]   Avoiding the pitfalls of single particle cryo-electron microscopy: Einstein from noise [J].
Henderson, Richard .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (45) :18037-18041
[9]   Tilt-Pair Analysis of Images from a Range of Different Specimens in Single-Particle Electron Cryomicroscopy [J].
Henderson, Richard ;
Chen, Shaoxia ;
Chen, James Z. ;
Grigorieff, Nikolaus ;
Passmore, Lori A. ;
Ciccarelli, Luciano ;
Rubinstein, John L. ;
Crowther, R. Anthony ;
Stewart, Phoebe L. ;
Rosenthal, Peter B. .
JOURNAL OF MOLECULAR BIOLOGY, 2011, 413 (05) :1028-1046
[10]   Structure of a V3-containing HIV-1 gp120 core [J].
Huang, CC ;
Tang, M ;
Zhang, MY ;
Majeed, S ;
Montabana, E ;
Stanfield, RL ;
Dimitrov, DS ;
Korber, B ;
Sodroski, J ;
Wilson, IA ;
Wyatt, R ;
Kwong, PD .
SCIENCE, 2005, 310 (5750) :1025-1028