Statistical mechanics of torque induced denaturation of DNA

被引:129
作者
Cocco, S
Monasson, R
机构
[1] Univ Rome La Sapienza, Dipartimento Sci Biochim, I-00185 Rome, Italy
[2] Ecole Normale Super Lyon, Phys Lab, CNRS, F-69364 Lyon 07, France
[3] ENS, Phys Theor Lab, CNRS, F-75005 Paris, France
关键词
D O I
10.1103/PhysRevLett.83.5178
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
A unifying theory of the denaturation transition of DNA, driven by temperature T or induced by an external mechanical torque Gamma is presented. Our model couples the hydrogen-bond opening and the untwisting of the helicoidal molecular structure. We describe denaturation as a first order transition from B-DNA to d-DNA phases. The coexistence region is naturally parametrized by the degree of supercoiling a. The denaturation free energy, the temperature dependence of the twist angle, the phase diagram in the T, Gamma plane, and isotherms in the sigma, Gamma plane are calculated and show a good agreement with experimental data.
引用
收藏
页码:5178 / 5181
页数:4
相关论文
共 19 条
[1]   Stretch genes [J].
Austin, RH ;
Brody, JP ;
Cox, EC ;
Duke, T ;
Volkmuth, W .
PHYSICS TODAY, 1997, 50 (02) :32-38
[2]   Helicoidal model for DNA opening [J].
Barbi, M ;
Cocco, S ;
Peyrard, M .
PHYSICS LETTERS A, 1999, 253 (5-6) :358-369
[3]   Elasticity model of a supercoiled DNA molecule [J].
Bouchiat, C ;
Mezard, M .
PHYSICAL REVIEW LETTERS, 1998, 80 (07) :1556-1559
[4]  
CALLADINE CR, 1997, UNDERSTANDING DNA
[5]   Experimental tests of the Peyrard-Bishop model applied to the melting of very short DNA chains [J].
Campa, A ;
Giansanti, A .
PHYSICAL REVIEW E, 1998, 58 (03) :3585-3588
[6]   Denaturation of heterogeneous DNA [J].
Cule, D ;
Hwa, T .
PHYSICAL REVIEW LETTERS, 1997, 79 (12) :2375-2378
[7]   ENTROPY-DRIVEN TRANSITION IN A ONE-DIMENSIONAL SYSTEM [J].
DAUXOIS, T ;
PEYRARD, M .
PHYSICAL REVIEW E, 1995, 51 (05) :4027-4040
[8]   CONFORMATIONAL FLUCTUATIONS OF DNA HELIX [J].
DEPEW, RE ;
WANG, JC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1975, 72 (11) :4275-4279
[9]   Structural transitions of a twisted and stretched DNA molecule [J].
Léger, JF ;
Romano, G ;
Sarkar, A ;
Robert, J ;
Bourdieu, L ;
Chatenay, D ;
Marko, JF .
PHYSICAL REVIEW LETTERS, 1999, 83 (05) :1066-1069
[10]   STATISTICAL-MECHANICS OF SUPERCOILED DNA [J].
MARKO, JF ;
SIGGIA, ED .
PHYSICAL REVIEW E, 1995, 52 (03) :2912-2938