Dynamics of Gene Silencing in a Live Cell: Stochastic Resonance

被引:15
作者
Chattoraj, Shyamtanu [1 ]
Saha, Shekhar [2 ]
Jana, Siddhartha Sankar [2 ]
Bhattacharyya, Kankan [1 ]
机构
[1] Indian Assoc Cultivat Sci, Dept Phys Chem, Kolkata 700032, India
[2] Indian Assoc Cultivat Sci, Dept Biol Chem, Kolkata 700032, India
来源
JOURNAL OF PHYSICAL CHEMISTRY LETTERS | 2014年 / 5卷 / 06期
关键词
NOISE; OSCILLATIONS; ENHANCEMENT; INFORMATION;
D O I
10.1021/jz500152m
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Binding of a specific siRNA to the target mRNA in a live cell (human breast cancer cell, MCF-7) is studied by confocal microscopy. The specific siRNA (labeled with a fluorophore, alexa 488) exhibits much higher intensity of fluorescence in the bound state than in the free (unbound) state. It is observed that repeated unbinding and rebinding of siRNA (to target mRNA) occur before gene silencing. 16 273 on-time periods (residence or dwell time of siRNA in bound form) are detected. They follow a strikingly simple pattern. All of the on-time periods are odd-integral multiples of 5.5 +/- 0.05 ms. This is ascribed to stochastic resonance.
引用
收藏
页码:1012 / 1016
页数:5
相关论文
共 38 条
[11]   Probing transcription factor dynamics at the single-molecule level in a living cell [J].
Elf, Johan ;
Li, Gene-Wei ;
Xie, X. Sunney .
SCIENCE, 2007, 316 (5828) :1191-1194
[12]   Stochastic resonance [J].
Gammaitoni, L ;
Hanggi, P ;
Jung, P ;
Marchesoni, F .
REVIEWS OF MODERN PHYSICS, 1998, 70 (01) :223-287
[13]   Stochastic kinetics of ribosomes: Single motor properties and collective behavior [J].
Garai, Ashok ;
Chowdhury, Debanjan ;
Chowdhury, Debashish ;
Ramakrishnan, T. V. .
PHYSICAL REVIEW E, 2009, 80 (01)
[14]   Fluctuations in protein synthesis from a single RNA template: Stochastic kinetics of ribosomes [J].
Garai, Ashok ;
Chowdhury, Debashish ;
Ramakrishnan, T. V. .
PHYSICAL REVIEW E, 2009, 79 (01)
[15]   Enhancement of stochastic resonance induced by either internal or external noise in NO reduction on platinum surfaces [J].
Gong, Yubing ;
Xu, Bo ;
Ma, Xiaoguang ;
Dong, Yongmian ;
Yang, Chuanlu .
JOURNAL OF PHYSICAL CHEMISTRY C, 2007, 111 (11) :4264-4268
[16]   Single-Molecule Views of Protein Movement on Single-Stranded DNA [J].
Ha, Taekjip ;
Kozlov, Alexander G. ;
Lohman, Timothy M. .
ANNUAL REVIEW OF BIOPHYSICS, VOL 41, 2012, 41 :295-319
[17]   Expectation-Maximization of the Potential of Mean Force and Diffusion Coefficient in Langevin Dynamics from Single Molecule FRET Data Photon by Photon [J].
Haas, Kevin R. ;
Yang, Haw ;
Chu, Jhih-Wei .
JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (49) :15591-15605
[18]   Probing Single-Molecule Enzyme Active-Site Conformational State Intermittent Coherence [J].
He, Yufan ;
Li, Yue ;
Mukherjee, Saptarshi ;
Wu, Yan ;
Yan, Honggao ;
Lu, H. Peter .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2011, 133 (36) :14389-14395
[19]   Stochastic Resonance in a Molecular Redox Circuit [J].
Hirano, Yoshiaki ;
Segawa, Yuji ;
Kawai, Tomoji ;
Matsumoto, Takuya .
JOURNAL OF PHYSICAL CHEMISTRY C, 2013, 117 (01) :140-145
[20]   Two-Dimensional Fluorescence Lifetime Correlation Spectroscopy. 1. Principle [J].
Ishii, Kunihiko ;
Tahara, Tahei .
JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (39) :11414-11422