Enhancing and confirming the specificity of RNAi experiments

被引:135
作者
Cullen, Bryan R. [1 ]
机构
[1] Duke Univ, Med Ctr, Ctr Virol, Durham, NC 27710 USA
[2] Duke Univ, Med Ctr, Dept Mol Genet & Microbiol, Durham, NC 27710 USA
关键词
D O I
10.1038/NMETH913
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
RNA interference (RNAi) provides a powerful technique for the derivation and analysis of loss-of-function phenotypes in vertebrate cells, where alternative approaches are either arduous or frequently ineffective. RNAi, however, is not always totally specific, and confirming the specificity, and hence the validity, of data obtained using RNAi therefore forms an essential component of experiments that rely on this technique. Here I briefly review the potential pitfalls associated with RNAi, and then suggest experimental approaches that can be used to maximize the specificity of RNAi or to confirm that the data obtained are indeed valid.
引用
收藏
页码:677 / 681
页数:5
相关论文
共 36 条
[1]   A MECHANISM BY WHICH ADENOVIRUS VIRUS-ASSOCIATED RNAI CONTROLS TRANSLATION IN A TRANSIENT EXPRESSION ASSAY [J].
AKUSJARVI, G ;
SVENSSON, C ;
NYGARD, O .
MOLECULAR AND CELLULAR BIOLOGY, 1987, 7 (01) :549-551
[2]   Role for a bidentate ribonuclease in the initiation step of RNA interference [J].
Bernstein, E ;
Caudy, AA ;
Hammond, SM ;
Hannon, GJ .
NATURE, 2001, 409 (6818) :363-366
[3]   3′ UTR seed matches, but not overall identity, are associated with RNAi off-targets [J].
Birmingham, A ;
Anderson, EM ;
Reynolds, A ;
Ilsley-Tyree, D ;
Leake, D ;
Fedorov, Y ;
Baskerville, S ;
Maksimova, E ;
Robinson, K ;
Karpilow, J ;
Marshall, WS ;
Khvorova, A .
NATURE METHODS, 2006, 3 (03) :199-204
[4]   Induction of an interferon response by RNAi vectors in mammalian cells [J].
Bridge, AJ ;
Pebernard, S ;
Ducraux, A ;
Nicoulaz, AL ;
Iggo, R .
NATURE GENETICS, 2003, 34 (03) :263-264
[5]   A system for stable expression of short interfering RNAs in mammalian cells [J].
Brummelkamp, TR ;
Bernards, R ;
Agami, R .
SCIENCE, 2002, 296 (5567) :550-553
[6]   Induction of stable RNA interference in mammalian cells [J].
Cullen, BR .
GENE THERAPY, 2006, 13 (06) :503-508
[7]   Transcription and processing of human microRNA precursors [J].
Cullen, BR .
MOLECULAR CELL, 2004, 16 (06) :861-865
[8]   Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells [J].
Elbashir, SM ;
Harborth, J ;
Lendeckel, W ;
Yalcin, A ;
Weber, K ;
Tuschl, T .
NATURE, 2001, 411 (6836) :494-498
[9]   Off-target effects by siRNA can induce toxic phenotype [J].
Fedorov, Yuriy ;
Anderson, Emily M. ;
Birmingham, Amanda ;
Reynolds, Angela ;
Karpilow, Jon ;
Robinson, Kathryn ;
Leake, Devin ;
Marshall, William S. ;
Khvorova, Anastasia .
RNA, 2006, 12 (07) :1188-1196
[10]   Short-term cytotoxic effects and long-term instability of RNAi delivered using lentiviral vectors [J].
Fish, RJ ;
Kruithof, EKO .
BMC MOLECULAR BIOLOGY, 2004, 5