An Improved United Atom Force Field for Simulation of Mixed Lipid Bilayers

被引:258
作者
Chiu, See-Wing [2 ,3 ]
Pandit, Sagar A. [4 ]
Scott, H. L. [1 ]
Jakobsson, Eric [2 ,3 ]
机构
[1] IIT, Dept Biol Chem & Phys Sci, Chicago, IL 60616 USA
[2] Univ Illinois, Dept Mol & Integrat Physiol, Dept Biochem,Natl Ctr Supercomp Applicat, UIUC Program Biophys Neurosci & Bioengn, Urbana, IL 61801 USA
[3] Univ Illinois, Beckman Inst, Urbana, IL 61801 USA
[4] Univ S Florida, Dept Phys, Tampa, FL 33620 USA
关键词
MOLECULAR-DYNAMICS SIMULATIONS; X-RAY-SCATTERING; DIMETHYL-PHOSPHATE; PARAMETERS; DIPALMITOYLPHOSPHATIDYLCHOLINE; EQUILIBRIA; HYDRATION;
D O I
10.1021/jp807056c
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We introduce a new force field (43A1-S3) for simulation of membranes by the Gromacs simulation package. Construction of the force fields is by standard methods of electronic structure computations for bond parameters and charge distribution and specific volumes and heats of vaporization for small-molecule components of the larger lipid molecules for van der Waals parameters. Some parameters from the earlier 43A1 force field are found to be correct in the context of these calculations, while others are modified. The validity of the force fields is demonstrated by correct replication of X-ray form factors and NMR order parameters over a wide range of membrane compositions in semi-isotropic NTP 1 atm simulations. 43-A1-S3 compares favorably with other force fields used in conjunction with the Gromacs simulation package with respect to the breadth of phenomena that it accurately reproduces.
引用
收藏
页码:2748 / 2763
页数:16
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