Emergence and scattering of multiple neurofibromatosis (NF1)-related sequences during hominoid evolution suggest a process of pericentromeric interchromosomal transposition

被引:73
作者
Regnier, V
Meddeb, M
Lecointre, G
Richard, F
Duverger, A
Nguyen, VG
Dutrillaux, B
Bernheim, A
Danglot, G
机构
[1] INST GUSTAVE ROUSSY,CNRS,URA 1967,F-94805 VILLEJUIF,FRANCE
[2] NATL MUSEUM NAT HIST,SERV SYST MOL,F-75231 PARIS 05,FRANCE
[3] NATL MUSEUM NAT HIST,LAB ICHTYOL,CNRS,GDR 1005,F-75231 PARIS 05,FRANCE
[4] INST CURIE,CNRS,UMR 147,F-75231 PARIS 05,FRANCE
关键词
D O I
10.1093/hmg/6.1.9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Type 1 neurofibromatosis (NF1) gene encodes for a member of the GTPase activating protein family and is considered to be a tumor suppressor gene, Its very high rate of de novo mutation in humans led us to study a specific feature of this gene: the presence of numerous NF1-related sequences, According to our results, the human genome contains at least 11 NF1-related sequences, nine of which are scattered near centromeric sequences of seven different chromosomes, These NF1-related sequences, whose extent is quite varied according to loci, are unprocessed copies of the NF1 gene, and bear-numerous mutations, A phylogenetic analysis of the six largest sequences indicates that they are all derived from a common ancestor, which would have appeared 22-33 million years ago, and was subsequently duplicated several times during hominoid evolution, The most recent duplication and interchromosomal transposition occurred in the last million years suggesting that the process could still be ongoing, intriguing similarities between the evolution of alpha-satellite DNA and NF1-related sequences suggest the involvement of a common genetic mechanism for the generation and pericentric spreading of these NF1 partial copies.
引用
收藏
页码:9 / 16
页数:8
相关论文
共 37 条
[31]   A 1.7-MB YAC CONTIG AROUND THE HUMAN BDNF GENE (11P13) - INTEGRATION OF THE PHYSICAL, GENETIC, AND CYTOGENETIC MAPS IN RELATION TO WAGR SYNDROME [J].
ROSIER, MF ;
GOGUEL, AF ;
MARTIN, A ;
LEPASLIER, D ;
COUILLIN, P ;
HOULGATTE, R ;
BERNHEIM, A ;
AUFFRAY, C ;
DEVIGNES, MD .
GENOMICS, 1994, 24 (01) :69-77
[32]   NUCLEOTIDE-SEQUENCES OF IMMUNOGLOBULIN-E GENES OF CHIMPANZEE AND ORANGUTAN - DNA MOLECULAR CLOCK AND HOMINOID EVOLUTION [J].
SAKOYAMA, Y ;
HONG, KJ ;
BYUN, SM ;
HISAJIMA, H ;
UEDA, S ;
YAOITA, Y ;
HAYASHIDA, H ;
MIYATA, T ;
HONJO, T .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1987, 84 (04) :1080-1084
[33]   RELATIVE ORDER DETERMINATION OF 4 YP COSMIDS ON METAPHASE AND INTERPHASE CHROMOSOMES BY 2-COLOR COMPETITIVE INSITU HYBRIDIZATION [J].
SLIM, R ;
WEISSENBACH, J ;
NGUYEN, VC ;
DANGLOT, G ;
BERNHEIM, A .
HUMAN GENETICS, 1991, 88 (01) :21-26
[34]   GENOMIC ANALYSIS OF A NF1-RELATED PSEUDOGENE ON HUMAN-CHROMOSOME-21 [J].
SUZUKI, H ;
OZAWA, N ;
TAGA, C ;
KANO, T ;
HATTORI, M ;
SAKAKI, Y .
GENE, 1994, 147 (02) :277-280
[35]   CLUSTAL-W - IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE [J].
THOMPSON, JD ;
HIGGINS, DG ;
GIBSON, TJ .
NUCLEIC ACIDS RESEARCH, 1994, 22 (22) :4673-4680
[36]   GENOMIC ANALYSIS OF SEQUENCE VARIATION IN TANDEMLY REPEATED DNA - EVIDENCE FOR LOCALIZED HOMOGENEOUS SEQUENCE DOMAINS WITHIN ARRAYS OF ALPHA-SATELLITE DNA [J].
WARBURTON, PE ;
WILLARD, HF .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 216 (01) :3-16
[37]   A palindromic structure in the pericentromeric region of various human chromosomes [J].
Wohr, G ;
Fink, T ;
Assum, G .
GENOME RESEARCH, 1996, 6 (04) :267-279