mRNA Degradation Machinery in Plants

被引:58
作者
Chiba, Yukako [1 ]
Green, Pamela J. [1 ,2 ,3 ]
机构
[1] Univ Delaware, Delaware Biotechnol Inst, Newark, DE 19711 USA
[2] Univ Delaware, Dept Plant & Soil Sci, Newark, DE 19711 USA
[3] Univ Delaware, Coll Marine & Earth Studies, Newark, DE 19711 USA
关键词
CYSTATHIONINE GAMMA-SYNTHASE; NONSENSE-MEDIATED DECAY; TERMINATION FACTOR ERF3; CIS-ACTING ELEMENTS; ENDONUCLEOLYTIC CLEAVAGE; DECAPPING ENZYME; POSTTRANSCRIPTIONAL AUTOREGULATION; UPF1; PHOSPHORYLATION; POLY(A) RIBONUCLEASE; TRANSGENIC TOBACCO;
D O I
10.1007/s12374-009-9021-2
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Control of gene expression is exerted by multiple steps such as transcription, mRNA processing, mRNA export, mRNA degradation, translation, and posttranslational events. Recent discovery of small RNAs has enhanced the impact of posttranscriptional regulation, in particular, alterations in mRNA stability in the regulation of gene expression. Therefore, mRNA turnover is an important process not only for setting the basal level of gene expression but also as a regulatory step. Compared to the mechanism of transcription, much less information is available regarding mRNA degradation machineries. However, in the past several years, various components involved in the mRNA degradation process have been identified in eukaryotes. In particular, progress in the plant field has revealed the involvement of mRNA turnover in a wide variety of developmental processes and hormonal responses. Here, we provide an overview of machineries involved in general mRNA degradation and mRNA surveillance systems in plants.
引用
收藏
页码:114 / 124
页数:11
相关论文
共 128 条
[61]   SMG6 is the catalytic endonuclease that cleaves mRNAs containing nonsense codons in metazoan [J].
Huntzinger, Eric ;
Kashima, Isao ;
Fauser, Maria ;
Sauliere, Jerome ;
Izaurralde, Elisa .
RNA, 2008, 14 (12) :2609-2617
[62]   Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay [J].
Isken, Olaf ;
Kim, Yoon Ki ;
Hosoda, Nao ;
Mayeur, Greg L. ;
Hershey, John W. B. ;
Maquat, Lynne E. .
CELL, 2008, 133 (02) :314-327
[63]   Nonsense-mediated decay of mutant waxy mRNA in rice [J].
Isshiki, M ;
Yamamoto, K ;
Satoh, H ;
Shimamoto, K .
PLANT PHYSIOLOGY, 2001, 125 (03) :1388-1395
[64]   Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways [J].
Ivanov, Pavel V. ;
Gehring, Niels H. ;
Kunz, Joachim B. ;
Hentze, Matthias W. ;
Kulozik, Andreas E. .
EMBO JOURNAL, 2008, 27 (05) :736-747
[65]   Characterization of Arabidopsis decapping proteins AtDCPI and AtDCP2, which are essential for post-embryonic development [J].
Iwasaki, Shintaro ;
Takeda, Atsushi ;
Motose, Hiroyasu ;
Watanabe, Yuichiro .
FEBS LETTERS, 2007, 581 (13) :2455-2459
[66]   CORRECTION [J].
JOFUKU, KD .
PLANT CELL, 1989, 1 (05) :567-567
[67]   Rat1p and Xrn1p are functionally interchangeable exoribonucleases that are restricted to and required in the nucleus and cytoplasm, respectively [J].
Johnson, AW .
MOLECULAR AND CELLULAR BIOLOGY, 1997, 17 (10) :6122-6130
[68]   Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay [J].
Kashima, I ;
Yamashita, A ;
Izumi, N ;
Kataoka, N ;
Morishita, R ;
Hoshino, S ;
Ohno, M ;
Dreyfuss, G ;
Ohno, S .
GENES & DEVELOPMENT, 2006, 20 (03) :355-367
[69]   Novel features of the XRN-family in Arabidopsis:: Evidence that AtXRN4, one of several orthologs of nuclear Xrn2p/Rat1p, functions in the cytoplasm [J].
Kastenmayer, JP ;
Green, PJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (25) :13985-13990
[70]   A novel class of bacteria-induced small RNAs in Arabidopsis [J].
Katiyar-Agarwal, Surekha ;
Gao, Shang ;
Vivian-Smith, Adam ;
Jin, Hailing .
GENES & DEVELOPMENT, 2007, 21 (23) :3123-3134