The EBI RDF platform: linked open data for the life sciences

被引：141

作者：

Jupp, Simon ^{[1
]}

Malone, James ^{[1
]}

Bolleman, Jerven ^{[2
]}

Brandizi, Marco ^{[1
]}

Davies, Mark ^{[1
]}

Garcia, Leyla ^{[1
]}

Gaulton, Anna ^{[1
]}

Gehant, Sebastien ^{[2
]}

Laibe, Camille ^{[1
]}

Redaschi, Nicole ^{[2
]}

Wimalaratne, Sarala M. ^{[1
]}

Martin, Maria ^{[1
]}

Le Novere, Nicolas ^{[1
]}

Parkinson, Helen ^{[1
]}

Birney, Ewan ^{[1
]}

Jenkinson, Andrew M. ^{[1
]}

机构：

[1] European Bioinformat Inst EMBL EBI, European Mol Biol Lab, Cambridge CB10 1SD, England

[2] Ctr Med Univ Geneva, SIB Swiss Inst Bioinformat, CH-1211 Geneva, Switzerland

来源：

BIOINFORMATICS | 2014年 / 30卷 / 09期

基金：

美国国家卫生研究院; 英国生物技术与生命科学研究理事会;

关键词：

D O I：

10.1093/bioinformatics/btt765

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Motivation: Resource description framework (RDF) is an emerging technology for describing, publishing and linking life science data. As a major provider of bioinformatics data and services, the European Bioinformatics Institute (EBI) is committed to making data readily accessible to the community in ways that meet existing demand. The EBI RDF platform has been developed to meet an increasing demand to coordinate RDF activities across the institute and provides a new entry point to querying and exploring integrated resources available at the EBI.

引用

页码：1338 / 1339

页数：2

共 11 条

[1] Bio2RDF: Towards a mashup to build bioinformatics knowledge systems [J].

Belleau, Francois ;

Nolin, Marc-Alexandre ;

Tourigny, Nicole ;

Rigault, Philippe ;

Morissette, Jean .

JOURNAL OF BIOMEDICAL INFORMATICS, 2008, 41 (05) :706-716

[2] ChEMBL: a large-scale bioactivity database for drug discovery [J].

Gaulton, Anna ;

Bellis, Louisa J. ;

Bento, A. Patricia ;

Chambers, Jon ;

Davies, Mark ;

Hersey, Anne ;

Light, Yvonne ;

McGlinchey, Shaun ;

Michalovich, David ;

Al-Lazikani, Bissan ;

Overington, John P. .

NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D1100-D1107

[3] The BioSample Database (BioSD) at the European Bioinformatics Institute [J].

Gostev, Mikhail ;

Faulconbridge, Adam ;

Brandizi, Marco ;

Fernandez-Banet, Julio ;

Sarkans, Ugis ;

Brazma, Alvis ;

Parkinson, Helen .

NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D64-D70

[4] Identifiers.org and MIRIAM Registry: community resources to provide persistent identification [J].

Juty, Nick ;

Le Novere, Nicolas ;

Laibe, Camille .

NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D580-D586

[5] Gene Expression Atlas update-a value-added database of microarray and sequencing-based functional genomics experiments [J].

Kapushesky, Misha ;

Adamusiak, Tomasz ;

Burdett, Tony ;

Culhane, Aedin ;

Farne, Anna ;

Filippov, Alexey ;

Holloway, Ele ;

Klebanov, Andrey ;

Kryvych, Nataliya ;

Kurbatova, Natalja ;

Kurnosov, Pavel ;

Malone, James ;

Melnichuk, Olga ;

Petryszak, Robert ;

Pultsin, Nikolay ;

Rustici, Gabriella ;

Tikhonov, Andrew ;

Travillian, Ravensara S. ;

Williams, Eleanor ;

Zorin, Andrey ;

Parkinson, Helen ;

Brazma, Alvis .

NUCLEIC ACIDS RESEARCH, 2012, 40 (D1) :D1077-D1081

[6]

Katayama T., 2010, J BIOMED SEMANTICS, V4, P6

[7] BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models [J].

Li, Chen ;

Donizelli, Marco ;

Rodriguez, Nicolas ;

Dharuri, Harish ;

Endler, Lukas ;

Chelliah, Vijayalakshmi ;

Li, Lu ;

He, Enuo ;

Henry, Arnaud ;

Stefan, Melanie I. ;

Snoep, Jacky L. ;

Hucka, Michael ;

Le Novere, Nicolas ;

Laibe, Camille .

BMC SYSTEMS BIOLOGY, 2010, 4

[8] Modeling sample variables with an Experimental Factor Ontology [J].

Malone, James ;

Holloway, Ele ;

Adamusiak, Tomasz ;

Kapushesky, Misha ;

Zheng, Jie ;

Kolesnikov, Nikolay ;

Zhukova, Anna ;

Brazma, Alvis ;

Parkinson, Helen .

BIOINFORMATICS, 2010, 26 (08) :1112-1118

[9]

Marshall MS, 2008, PROTOTYPE KNOWLEDGE

[10] Reactome knowledgebase of human biological pathways and processes [J].

Matthews, Lisa ;

Gopinath, Gopal ;

Gillespie, Marc ;

Caudy, Michael ;

Croft, David ;

de Bono, Bernard ;

Garapati, Phani ;

Hemish, Jill ;

Hermjakob, Henning ;

Jassal, Bijay ;

Kanapin, Alex ;

Lewis, Suzanna ;

Mahajan, Shahana ;

May, Bruce ;

Schmidt, Esther ;

Vastrik, Imre ;

Wu, Guanming ;

Birney, Ewan ;

Stein, Lincoln ;

D'Eustachio, Peter .

NUCLEIC ACIDS RESEARCH, 2009, 37 :D619-D622

← 1 2 →