Biomolecular motion characterization by a self-distribution-function procedure in elastic incoherent neutron scattering

被引:15
作者
Magazu, Salvatore [1 ]
Maisano, Giacomo [1 ]
Migliardo, Federica [1 ,2 ]
Benedetto, Antonio [1 ]
机构
[1] Univ Messina, Dipartimento Fis, I-98166 Messina, Italy
[2] Univ Lille 1, UNESCO, Lab Dynam & Struct Mat Mol, CNRS,UMR 8024, F-59655 Villeneuve Dascq, France
来源
PHYSICAL REVIEW E | 2009年 / 79卷 / 04期
关键词
biological techniques; molecular biophysics; molecule-neutron collisions; statistical distributions; sugar; RESOLUTION SPECTROSCOPY; TEMPERATURE-DEPENDENCE; MYOGLOBIN; DYNAMICS; WATER; SIMULATION; MODES;
D O I
10.1103/PhysRevE.79.041915
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
In the present paper we first focus on the role of the instrumental resolution in elastic incoherent neutron scattering (EINS) where the connection between the self-distribution function (SDF) and the measured EINS intensity profile is highlighted. Second we show how the SDF procedure, previously introduced, allows both the total and the partial mean-square displacement evaluations through the total and the partial SDFs. Finally, we compare the SDF and the Gaussian procedures, by applying the two approaches to EINS data collected, by the IN13 backscattering spectrometer (Institute Laue-Langevin, Grenoble), on aqueous mixtures of two homologous disaccharides, i.e., sucrose and trehalose, and on myoglobin.
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页数:9
相关论文
共 25 条
[1]   A combined neutron scattering and simulation study on bioprotectant systems [J].
Affouard, F ;
Bordat, P ;
Descamps, M ;
Lerbret, A ;
Magazù, S ;
Migliardo, F ;
Ramirez-Cuesta, AJ ;
Telling, MFT .
CHEMICAL PHYSICS, 2005, 317 (2-3) :258-266
[2]   DETERMINATION OF WEIGHTED DENSITY-OF-STATES OF VIBRATIONAL-MODES IN ZN-SUBSTITUTED MYOGLOBIN [J].
AHN, JS ;
KANEMATSU, Y ;
ENOMOTO, M ;
KUSHIDA, T .
CHEMICAL PHYSICS LETTERS, 1993, 215 (04) :336-340
[3]   ONE-DIMENSIONAL CH3-QUANTUMROTATOR IN SOLID 4-METHYL-PYRIDINE STUDIED BY INELASTIC NEUTRON-SCATTERING [J].
ALEFELD, B ;
KOLLMAR, A ;
DASANNACHARYA, BA .
JOURNAL OF CHEMICAL PHYSICS, 1975, 63 (10) :4415-4417
[4]   Energy resolution and dynamical heterogeneity effects on elastic incoherent neutron scattering from molecular systems [J].
Becker, T ;
Smith, JC .
PHYSICAL REVIEW E, 2003, 67 (02) :8-219048
[5]  
Bee M., 1998, Quasielastic Neutron Scattering: Principles and Applications in Solid State Chemistry, Biology and Materials Science, P28
[6]   Harmonic behavior of trehalose-coated carbon-monoxy-myoglobin at high temperature [J].
Cordone, L ;
Ferrand, M ;
Vitrano, E ;
Zaccai, G .
BIOPHYSICAL JOURNAL, 1999, 76 (02) :1043-1047
[7]   Molecular dynamics simulation of carboxy-myoglobin embedded in a trehalose-water matrix [J].
Cottone, G ;
Cordone, L ;
Ciccotti, G .
BIOPHYSICAL JOURNAL, 2001, 80 (02) :931-938
[8]   TEMPERATURE-DEPENDENCE OF THE LOW-FREQUENCY DYNAMICS OF MYOGLOBIN - MEASUREMENT OF THE VIBRATIONAL FREQUENCY-DISTRIBUTION BY INELASTIC NEUTRON-SCATTERING [J].
CUSACK, S ;
DOSTER, W .
BIOPHYSICAL JOURNAL, 1990, 58 (01) :243-251
[9]   Water-coupled low-frequency modes of myoglobin and lysozyme observed by inelastic neutron scattering [J].
Diehl, M ;
Doster, W ;
Petry, W ;
Schober, H .
BIOPHYSICAL JOURNAL, 1997, 73 (05) :2726-2732
[10]   Protein-water displacement distributions [J].
Doster, W ;
Settles, M .
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2005, 1749 (02) :173-186