An approach to crystallizing. proteins by synthetic symmetrization

被引:74
作者
Banatao, D. Rey
Cascio, Duilio
Crowley, Christopher S.
Fleissner, Mark R.
Tienson, Heather L.
Yeates, Todd O.
机构
[1] Univ Calif Los Angeles, Dept Chem & Biochem, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, Calif Nanosyst Inst, Los Angeles, CA 90095 USA
[3] Univ Calif Los Angeles, DOE Inst Genom & Prote, Los Angeles, CA 90095 USA
[4] Univ Calif Los Angeles, Inst Mol Biol, Los Angeles, CA 90095 USA
关键词
assembly; crystallography; disulfide; protein design; symmetry;
D O I
10.1073/pnas.0607674103
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Previous studies of symmetry preferences in protein crystals suggest that symmetric proteins, such as homodimers, might crystallize more readily on average than asymmetric, monomeric proteins. Proteins that are naturally monomeric can be made homodimeric artificially by forming disulfide bonds between individual cysteine residues introduced by mutagenesis. Furthermore, by creating a variety of single-cysteine mutants, a series of distinct synthetic dimers can be generated for a given protein of interest, with each expected to gain advantage from its added symmetry and to exhibit a crystallization behavior distinct from the other constructs. This strategy was tested on phage T4 lysozyme, a protein whose crystallization as a monomer has been studied exhaustively. Experiments on three single-cysteine mutants, each prepared in dimeric form, yielded numerous novel crystal forms that cannot be realized by monomeric lysozyme. Six new crystal forms have been characterized. The results suggest that synthetic symmetrization may be a useful approach for enlarging the search space for crystallizing proteins.
引用
收藏
页码:16230 / 16235
页数:6
相关论文
共 41 条
[1]   BASIC LOCAL ALIGNMENT SEARCH TOOL [J].
ALTSCHUL, SF ;
GISH, W ;
MILLER, W ;
MYERS, EW ;
LIPMAN, DJ .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 215 (03) :403-410
[2]   The Protein Data Bank [J].
Berman, HM ;
Westbrook, J ;
Feng, Z ;
Gilliland, G ;
Bhat, TN ;
Weissig, H ;
Shindyalov, IN ;
Bourne, PE .
NUCLEIC ACIDS RESEARCH, 2000, 28 (01) :235-242
[3]  
Campbell J W, 1972, Cold Spring Harb Symp Quant Biol, V36, P165
[4]   Structure of the MscL homolog from Mycobacterium tuberculosis:: A gated mechanosensitive ion channel [J].
Chang, G ;
Spencer, RH ;
Lee, AT ;
Barclay, MT ;
Rees, DC .
SCIENCE, 1998, 282 (5397) :2220-2226
[5]   Turning protein crystallisation from an art into a science [J].
Chayen, NE .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2004, 14 (05) :577-583
[6]   Entropy and surface engineering in protein crystallization [J].
Derewenda, ZS ;
Vekilov, PG .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2006, 62 :116-124
[7]   The use of recombinant methods and molecular engineering in protein crystallization [J].
Derewenda, ZS .
METHODS, 2004, 34 (03) :354-363
[8]   Rational protein crystallization by mutational surface engineering [J].
Derewenda, ZS .
STRUCTURE, 2004, 12 (04) :529-535
[9]   Coot:: model-building tools for molecular graphics [J].
Emsley, P ;
Cowtan, K .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2004, 60 :2126-2132
[10]   Expression, purification, and crystallization of the RGS-like domain from the rho nucleotide exchange factor, PDZ-RhoGEF, using the surface entropy reduction approach [J].
Garrard, SM ;
Longenecker, KL ;
Lewis, ME ;
Sheffield, PJ ;
Derewenda, ZS .
PROTEIN EXPRESSION AND PURIFICATION, 2001, 21 (03) :412-416