A general map of iron metabolism and tissue-specific subnetworks

被引:67
作者
Hower, Valerie [1 ,2 ]
Mendes, Pedro [2 ,3 ,4 ]
Torti, Frank M. [1 ,5 ]
Laubenbacher, Reinhard [2 ]
Akman, Steven [1 ,5 ]
Shulaev, Vladmir [2 ]
Torti, Suzy V. [1 ,6 ]
机构
[1] Wake Forest Univ, Dept Canc Biol, Sch Med, Winston Salem, NC 27157 USA
[2] Virginia Bioinformat Inst, Blacksburg, VA 24061 USA
[3] Univ Manchester, Sch Comp Sci, Manchester M1 7DN, Lancs, England
[4] Univ Manchester, Manchester Ctr Integrat Syst Biol, Manchester M1 7DN, Lancs, England
[5] Wake Forest Univ, Ctr Comprehens Canc, Sch Med, Winston Salem, NC 27157 USA
[6] Wake Forest Univ, Dept Biochem, Sch Med, Winston Salem, NC 27157 USA
基金
英国工程与自然科学研究理事会;
关键词
ELEMENT-BINDING-PROTEIN; DELTA-AMINOLEVULINATE SYNTHASE; HUMAN MITOCHONDRIAL FERRITIN; HUMAN TRANSFERRIN RECEPTOR; DUODENAL CYTOCHROME-B; HEREDITARY HEMOCHROMATOSIS PROTEIN; ERYTHROID 5-AMINOLEVULINATE SYNTHASE; GELATINASE-ASSOCIATED LIPOCALIN; CRYSTALLINE HUMAN FERROXIDASE; DIVALENT METAL TRANSPORTER-1;
D O I
10.1039/b816714c
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Iron is required for survival of mammalian cells. Recently, understanding of iron metabolism and trafficking has increased dramatically, revealing a complex, interacting network largely unknown just a few years ago. This provides an excellent model for systems biology development and analysis. The first step in such an analysis is the construction of a structural network of iron metabolism, which we present here. This network was created using CellDesigner version 3.5.2 and includes reactions occurring in mammalian cells of numerous tissue types. The iron metabolic network contains 151 chemical species and 107 reactions and transport steps. Starting from this general model, we construct iron networks for specific tissues and cells that are fundamental to maintaining body iron homeostasis. We include subnetworks for cells of the intestine and liver, tissues important in iron uptake and storage, respectively, as well as the reticulocyte and macrophage, key cells in iron utilization and recycling. The addition of kinetic information to our structural network will permit the simulation of iron metabolism in different tissues as well as in health and disease.
引用
收藏
页码:422 / 443
页数:22
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