Reproducibility and Prognosis of Quantitative Features Extracted from CT Images

被引:273
作者
Balagurunathan, Yoganand [1 ,2 ]
Gu, Yuhua [1 ,2 ]
Wang, Hua [1 ,2 ,3 ]
Kumar, Virendra [1 ,2 ]
Grove, Olya [1 ,2 ]
Hawkins, Sam [4 ]
Kim, Jongphil [2 ,5 ]
Goldgof, Dmitry B. [4 ]
Hall, Lawrence O. [4 ]
Gatenby, Robert A. [6 ]
Gillies, Robert J. [1 ,2 ,6 ]
机构
[1] Univ S Florida, H Lee Moffitt Canc Ctr, Dept Canc Imaging & Metab, Tampa, FL 33612 USA
[2] Inst Res, Tampa, FL USA
[3] Tianjin Med Univ, Canc Inst & Hosp, Dept Radiol, Tianjin, Peoples R China
[4] Univ S Florida, Dept Comp Sci & Engn, Tampa, FL USA
[5] Univ S Florida, H Lee Moffitt Canc Ctr, Dept Biostat, Tampa, FL 33682 USA
[6] Univ S Florida, H Lee Moffitt Canc Ctr, Dept Radiol, Tampa, FL 33682 USA
基金
美国国家卫生研究院;
关键词
PERIPHERAL LUNG ADENOCARCINOMA; FEATURE-SELECTION; TUMOR RESPONSE; CANCER; THERAPY; VARIABILITY; SURVIVAL; NETWORK;
D O I
10.1593/tlo.13844
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
We study the reproducibility of quantitative imaging features that are used to describe tumor shape, size, and texture from computed tomography (CT) scans of non-small cell lung cancer (NSCLC). CT images are dependent on various scanning factors. We focus on characterizing image features that are reproducible in the presence of variations due to patient factors and segmentation methods. Thirty-two NSCLC nonenhanced lung CT scans were obtained from the Reference Image Database to Evaluate Response data set. The tumors were segmented using both manual (radiologist expert) and ensemble (software-automated) methods. A set of features (219 three-dimensional and 110 two-dimensional) was computed, and quantitative image features were statistically filtered to identify a subset of reproducible and nonredundant features. The variability in the repeated experiment was measured by the test-retest concordance correlation coefficient (CCCTreT). The natural range in the features, normalized to variance, was measured by the dynamic range (DR). In this study, there were 29 features across segmentation methods found with CCCTreT and DR >= 0.9 and R-2 Bet >= 0.95. These reproducible features were tested for predicting radiologist prognostic score; some texture features (run-length and Laws kernels) had an area under the curve of 0.9. The representative features were tested for their prognostic capabilities using an independent NSCLC data set (59 lung adenocarcinomas), where one of the texture features, run-length gray-level nonuniformity, was statistically significant in separating the samples into survival groups (P <= .046).
引用
收藏
页码:72 / 87
页数:16
相关论文
共 40 条
[21]   Abdominal organ segmentation using texture transforms and a Hopfield neural network [J].
Koss, JE ;
Newman, FD ;
Johnson, TK ;
Kirch, DL .
IEEE TRANSACTIONS ON MEDICAL IMAGING, 1999, 18 (07) :640-648
[22]   Scoring system predictive of survival for patients undergoing stereotactic body radiation therapy for liver tumors [J].
Kress, Marie-Adele S. ;
Collins, Brian T. ;
Collins, Sean P. ;
Dritschilo, Anatoly ;
Gagnon, Gregory ;
Unger, Keith .
RADIATION ONCOLOGY, 2012, 7
[23]  
Laws K.I., 1980, Texture Image Segmentation
[24]  
Lin LI-K, 1989, BIOMETRICS, V45, P13
[25]   Computed Tomography Assessment of Response to Therapy: Tumor Volume Change Measurement, Truth Data, and Error [J].
McNitt-Gray, Michael F. ;
Bidaut, Luc M. ;
Armato, Samuel G., III ;
Meyer, Charles R. ;
Gavrielides, Marios A. ;
Fenimore, Charles ;
McLennan, Geoffrey ;
Petrick, Nicholas ;
Zhao, Binsheng ;
Reeves, Anthony P. ;
Beichel, Reinhard ;
Kim, Hyun-Jung ;
Kinnard, Lisa .
TRANSLATIONAL ONCOLOGY, 2009, 2 (04) :216-222
[26]   Evaluation of lung MDCT nodule annotation across radiologists and methods [J].
Meyer, Charles R. ;
Johnson, Timothy D. ;
McLennan, Geoffrey ;
Aberle, Denise R. ;
Kazerooni, Ella A. ;
MacMahon, Heber ;
Mullan, Brian F. ;
Yankelevitz, David F. ;
van Beek, Edwin J. R. ;
Armato, Samuel G., III ;
McNitt-Gray, Michael F. ;
Reeves, Anthony P. ;
Gur, David ;
Henschke, Claudia I. ;
Hoffman, Eric A. ;
Bland, Peyton H. ;
Laderach, Gary ;
Pais, Richie ;
Qing, David ;
Piker, Chris ;
Guo, Junfeng ;
Starkey, Adam ;
Max, Daniel ;
Croft, Barbara Y. ;
Clarke, Laurence P. .
ACADEMIC RADIOLOGY, 2006, 13 (10) :1254-1265
[27]   Shape analysis of breast masses in mammograms via the fractal dimension [J].
Nguyen, Thanh A. ;
Rangayyan, Rangaraj M. .
2005 27TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-7, 2005, :3210-3213
[28]   FLOATING SEARCH METHODS IN FEATURE-SELECTION [J].
PUDIL, P ;
NOVOVICOVA, J ;
KITTLER, J .
PATTERN RECOGNITION LETTERS, 1994, 15 (11) :1119-1125
[29]   A review of feature selection techniques in bioinformatics [J].
Saeys, Yvan ;
Inza, Inaki ;
Larranaga, Pedro .
BIOINFORMATICS, 2007, 23 (19) :2507-2517
[30]   The opportunities and challenges of developing imaging biomarkers to study lung function and disease [J].
Schuster, Daniel P. .
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 2007, 176 (03) :224-230