Highly efficient peptide separations in proteomics Part 2: Bi- and multidimensional liquid-based separation techniques

被引:81
作者
Sandra, Koen [1 ,2 ]
Moshir, Mahan [2 ]
D'hondt, Filip [2 ]
Tuytten, Robin [2 ]
Verleysen, Katleen [2 ]
Kas, Koen [2 ]
Francois, Isabelle [3 ]
Sandra, Pat [1 ,3 ]
机构
[1] RIC, B-8500 Kortrijk, Belgium
[2] VIB Bio Incubator, B-9052 Zwijnaarde Ghent, Belgium
[3] Univ Ghent, Dept Organ Chem, B-9000 Ghent, Belgium
来源
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES | 2009年 / 877卷 / 11-12期
关键词
Proteomics; Peptides; Multidimensional; Chromatography; Electrophoresis; On-line; Off-line; TANDEM MASS-SPECTROMETRY; HYDROPHILIC-INTERACTION CHROMATOGRAPHY; PROTEIN IDENTIFICATION TECHNOLOGY; CATION-EXCHANGE CHROMATOGRAPHY; LARGE-SCALE IDENTIFICATION; REVERSED-PHASE HPLC; PEAK-CAPACITY; ION-EXCHANGE; OFF-LINE; 2-DIMENSIONAL ELECTROPHORESIS;
D O I
10.1016/j.jchromb.2009.02.050
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Multidimensional liquid-based separation techniques are described for maximizing the resolution of the enormous number of peptides generated upon tryptic digestion of proteomes, and hence, reduce the spatial and temporal complexity of the sample to a level that allows successful mass spectrometric analysis. This review complements the previous contribution on unidimensional high performance liquid chromatography (HPLC). Both chromatography and electrophoresis will be discussed albeit with reversed-phase HPLC (RPLC) as the final separation dimension prior to MS analysis. (C) 2009 Elsevier B.V. All rights reserved.
引用
收藏
页码:1019 / 1039
页数:21
相关论文
共 147 条
[1]   Toward a human blood serum proteome - Analysis by multidimensional separation coupled with mass spectrometry [J].
Adkins, JN ;
Varnum, SM ;
Auberry, KJ ;
Moore, RJ ;
Angell, NH ;
Smith, RD ;
Springer, DL ;
Pounds, JG .
MOLECULAR & CELLULAR PROTEOMICS, 2002, 1 (12) :947-955
[2]  
Aguilar MI, 1996, METHOD ENZYMOL, V270, P3
[3]   Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis [J].
Aivaliotis, Michalis ;
Gevaert, Kris ;
Falb, Michaela ;
Tebbe, Andreas ;
Konstantinidis, Kosta ;
Bisle, Birgit ;
Klein, Christian ;
Martens, Lennart ;
Staes, An ;
Timmerman, Evy ;
Van Damme, Jozef ;
Siedler, Frank ;
Pfeiffer, Friedhelm ;
Vandekerckhove, Joel ;
Oesterhelt, Dieter .
JOURNAL OF PROTEOME RESEARCH, 2007, 6 (06) :2195-2204
[4]   HYDROPHILIC-INTERACTION CHROMATOGRAPHY FOR THE SEPARATION OF PEPTIDES, NUCLEIC-ACIDS AND OTHER POLAR COMPOUNDS [J].
ALPERT, AJ .
JOURNAL OF CHROMATOGRAPHY, 1990, 499 :177-196
[5]   Selective enrichment and ultrasensitive identification of trace peptides in proteome analysis using transient capillary isotachophoresis/zone electrophoresis coupled with nano-ESI-MS [J].
An, Yanming ;
Cooper, Jonathan W. ;
Balgley, Brian M. ;
Lee, Cheng S. .
ELECTROPHORESIS, 2006, 27 (18) :3599-3608
[6]   Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins [J].
Anderson, L ;
Hunter, CL .
MOLECULAR & CELLULAR PROTEOMICS, 2006, 5 (04) :573-588
[7]   A theoretical basis for parameter selection and instrument design in comprehensive size-exclusion chromatography x liquid chromatography [J].
Bedani, Filippo ;
Kok, Wim Th. ;
Janssen, Hans-Gerd .
JOURNAL OF CHROMATOGRAPHY A, 2006, 1133 (1-2) :126-134
[8]   Hydrophilic interaction liquid chromatography (HILIC) in proteomics [J].
Boersema, Paul J. ;
Mohammed, Shabaz ;
Heck, Albert J. R. .
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2008, 391 (01) :151-159
[9]   Evaluation and optimization of ZIC-HILIC-RP as an alternative MudPIT strategy [J].
Boersema, Paul J. ;
Divecha, Nullin ;
Heck, Albert J. R. ;
Mohammed, Shabaz .
JOURNAL OF PROTEOME RESEARCH, 2007, 6 (03) :937-946
[10]   AUTOMATED INSTRUMENTATION FOR COMPREHENSIVE 2-DIMENSIONAL HIGH-PERFORMANCE LIQUID-CHROMATOGRAPHY OF PROTEINS [J].
BUSHEY, MM ;
JORGENSON, JW .
ANALYTICAL CHEMISTRY, 1990, 62 (02) :161-167