Improved naive Bayesian modeling of numerical data for absorption, distribution, metabolism and excretion (ADME) property prediction

被引:83
作者
Klon, Anthony E. [1 ]
Lowrie, Jeffrey F. [1 ]
Diller, David J. [1 ]
机构
[1] Pharmacopeia Drug Discovery Inc, Dept Mol Modeling, Princeton, NJ 08543 USA
关键词
D O I
10.1021/ci0601315
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
We have implemented a naive Bayesian classifier which models continuous numerical data using a Gaussian distribution. Several cases of interest in the area of absorption, distribution, metabolism, and excretion prediction are presented which demonstrate that this approach is superior to the implementation of naive Bayesian classifiers in which continuous chemical descriptors are modeled as binary data. We demonstrate that this enhanced performance, upon comparison with other implementations, is independent of the descriptor sets chosen. We also compare the performance of three implementations of naive Bayesian classifiers with other previously described models.
引用
收藏
页码:1945 / 1956
页数:12
相关论文
共 42 条
[1]  
Bayes T., 1763, Philosophical Transactions, V53, P370, DOI [10.1098/rstl.1763.0053, DOI 10.1098/RSTL.1763.0053]
[2]  
*CHEM COMP GROUP I, 2005, MOL OP ENV 2005 06
[3]   Computation of the physio-chemical properties and data mining of large molecular collections [J].
Cheng, A ;
Diller, DJ ;
Dixon, SL ;
Egan, WJ ;
Lauri, G ;
Merz, KM .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2002, 23 (01) :172-183
[4]  
Chinnasamy Arunkumar, 2005, Journal of Bioinformatics and Computational Biology, V3, P803, DOI 10.1142/S0219720005001302
[5]   Linear correlation of the fraction of oral dose absorbed of 64 drugs between humans and rats [J].
Chiou, WL ;
Barve, A .
PHARMACEUTICAL RESEARCH, 1998, 15 (11) :1792-1795
[6]   Evaluation of using dog as an animal model to study the fraction of oral dose absorbed of 43 drugs in humans [J].
Chiou, WL ;
Jeong, HY ;
Chung, SM ;
Wu, TC .
PHARMACEUTICAL RESEARCH, 2000, 17 (02) :135-140
[7]   Comparison of oral absorption and bioavailability of drugs between monkey and human [J].
Chiou, WL ;
Buehler, PW .
PHARMACEUTICAL RESEARCH, 2002, 19 (06) :868-874
[8]   Computational ADME/Tox Modeling: Aiding Understanding and Enhancing Decision Making in Drug Design [J].
Delisle, Robert K. ;
Lowrie, Jeffery F. ;
Hobbs, Doug W. ;
Diller, David. J. .
CURRENT COMPUTER-AIDED DRUG DESIGN, 2005, 1 (04) :325-345
[9]   One-dimensional molecular representations and similarity calculations: Methodology and validation [J].
Dixon, SL ;
Merz, KM .
JOURNAL OF MEDICINAL CHEMISTRY, 2001, 44 (23) :3795-3809
[10]   Prediction of drug absorption using multivariate statistics [J].
Egan, WJ ;
Merz, KM ;
Baldwin, JJ .
JOURNAL OF MEDICINAL CHEMISTRY, 2000, 43 (21) :3867-3877