Amino groups in nucleic acid bases, aniline, aminopyridines, and aminotriazine are nonplanar: Results of correlated ab initio quantum chemical calculations and anharmonic analysis of the aniline inversion motion

被引:111
作者
Bludsky, O
Sponer, J
Leszczynski, J
Spirko, V
Hobza, P
机构
[1] ACAD SCI CZECH REPUBL, J HEYROVSKY INST PHYS CHE, CR-18223 PRAGUE 8, CZECH REPUBLIC
[2] JACKSON STATE UNIV, DEPT CHEM, JACKSON, MS 39217 USA
关键词
D O I
10.1063/1.472904
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The amino group nonplanarity in nucleic acid bases, aniline, aminopyridines, and aminotriazine was investigated by ab initio methods with and without inclusion of correlation energy utilizing medium and extended basis sets. For all the systems studied, the amino group was found to be nonplanar and the coupled cluster method [CCSD(T)] ''nonplanarities'' and inversion barriers slightly higher than their second-order many-body perturbation-theory (MP2) counterparts. To assess the reliability of the calculations, inversion splittings for aniline and aniline-ND2 were evaluated by solving a two-dimensional vibrational Schrodinger equation for the large-amplitude inversion and torsion motions, while respecting the role of small-amplitude C-N stretching and H-N-H bending motions. Because a large number of points is required for the description of the aniline potential energy surface, the Hartree-Fock (HF) method with 6-31G* basis set was utilized. The vibrational calculations were performed within the framework of the semirigid bender Hamiltonian of Landsberg and Bunker. Excellent agreement between experimental and theoretical inversion-torsion frequencies for fundamental, overtone, and combination modes was found, which gives strong evidence for the adequacy of the theoretical model used in general, and potential energy surface in particular. Similarity between the HF, MP2, and CCSD(T) aniline inversion barriers and amino group nonplanarities gives us confidence that the MP2 and CCSD(T) inversion barriers and amino group nonplanarities of the DNA bases, aminopyridine, and aminotriazine, are close to the actual values which are still experimentally unknown. (C) 1996 American Institute of Physics.
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页码:11042 / 11050
页数:9
相关论文
共 39 条
[31]  
SPONER J, 1994, J MOL STRUC-THEOCHEM, V110, P35, DOI 10.1016/0166-1280(94)80005-7
[32]   NONPLANAR GEOMETRIES OF DNA BASES - AB-INITIO 2ND-ORDER MOLLER-PLESSET STUDY [J].
SPONER, J ;
HOBZA, P .
JOURNAL OF PHYSICAL CHEMISTRY, 1994, 98 (12) :3161-3164
[33]   BIFURCATED HYDROGEN-BONDS IN DNA CRYSTAL-STRUCTURES - AN AB-INITIO QUANTUM-CHEMICAL STUDY [J].
SPONER, J ;
HOBZA, P .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1994, 116 (02) :709-714
[34]   Structures and energies of hydrogen-bonded DNA base pairs. A nonempirical study with inclusion of electron correlation [J].
Sponer, J ;
Leszczynski, J ;
Hobza, P .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (05) :1965-1974
[35]  
SPONER J, 1996, COMPUTATIONAL CHEM R, P185
[36]   MODELING OF ELECTROSTATIC INTERACTIONS BETWEEN NUCLEOTIDE BASES USING DISTRIBUTED MULTIPOLES [J].
TROLLOPE, KI ;
GOULD, IR ;
HILLIER, IH .
CHEMICAL PHYSICS LETTERS, 1993, 209 (1-2) :113-116
[37]  
WANG Y, 1993, J MOL STRUC-THEOCHEM, V100, P91, DOI 10.1016/0166-1280(93)87064-K
[38]  
WERNER HJ, 1995, MOLPRO
[39]   GAUSSIAN-BASIS SETS FOR USE IN CORRELATED MOLECULAR CALCULATIONS .3. THE ATOMS ALUMINUM THROUGH ARGON [J].
WOON, DE ;
DUNNING, TH .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (02) :1358-1371