FGDB:: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum

被引:65
作者
Gueldener, Ulrich [1 ]
Mannhaupt, Gertrud
Muensterkoetter, Martin
Haase, Dirk
Oesterheld, Matthias
Stuempflen, Volker
Mewes, Hans-Werner
Adam, Gerhard
机构
[1] Tech Univ Munich, Ctr Life & Food Sci, Chair Genome Oriented Bioinformat, D-85350 Freising Weihenstephan, Germany
[2] Max Planck Inst Terr Microbiol, Dept Organ Interact, D-35043 Marburg, Germany
[3] GSF, Natl Res Ctr Environm & Hlth, Inst Bioinformat, D-85764 Neuherberg, Germany
[4] BOKU Univ Med Resources & Appl Life Sci, Dept Appl Plant Sci & Plant Biotechnol, Inst Appl Genet & Cell Biol, A-1190 Vienna, Austria
关键词
D O I
10.1093/nar/gkj026
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The MIPS Fusarium graminearum Genome Database (FGDB) is a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat and barley. FGDB provides information on two gene sets independently derived by automated annotation of the F. graminearum genome sequence. A complete manually revised gene set will be completed within the near future. The initial results of systematic manual correction of gene calls are already part of the current gene set. The database can be accessed to retrieve information from bioinformatics analyses and functional classifications of the proteins. The data are also organized in the well established MIPS catalogs and novel query techniques are available to search the data. The comprehensive set of gene calls was also used for the design of an Affymetrix GeneChip. The resource is accessible on http://mips.gsf.de/genre/proj/fusarium/.
引用
收藏
页码:D456 / D458
页数:3
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