Navigating the network: signaling cross-talk in hematopoietic cells

被引:45
作者
Fraser, Iain D. C. [1 ]
Germain, Ronald N. [2 ,3 ]
机构
[1] NIAID, Mol & Cell Biol Grp, NIH, Bethesda, MD 20892 USA
[2] NIAID, Immunol Grp, Program Syst Immunol & Infect Dis Modeling, NIH, Bethesda, MD 20892 USA
[3] NIAID, Lymphocyte Biol Sect, Immunol Lab, NIH, Bethesda, MD 20892 USA
基金
美国国家卫生研究院;
关键词
PROTEIN INTERACTION NETWORK; RNA-INTERFERENCE; SYSTEMS BIOLOGY; MULTIPLEXED ANALYSIS; FLUORESCENT PROTEIN; GENE-EXPRESSION; IN-VIVO; TRANSDUCTION; TYROSINE; KINASE;
D O I
10.1038/ni.1711
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
071005 [微生物学]; 100108 [医学免疫学];
摘要
Recent studies in hematopoietic cells have led to a growing appreciation of the diverse modes of molecular and functional crosstalk between canonical signaling pathways. However, these intersections represent only the tip of the iceberg. Emerging global analytical methods are providing an even richer and more complete picture of the many components that measurably interact in a network manner to produce cellular responses. Here we highlight the pieces in this Focus, emphasize the limitations of the present canonical pathway paradigm, and discuss the value of a systems biology approach using more global, quantitative experimental design and data analysis strategies. Lastly, we urge caution about overly facile interpretation of genome-and proteome-level studies.
引用
收藏
页码:327 / 331
页数:5
相关论文
共 57 条
[1]
Collecting and organizing systematic sets of protein data [J].
Albeck, John G. ;
MacBeath, Gavin ;
White, Forest M. ;
Sorger, Peter K. ;
Lauffenburger, Douglas A. ;
Gaudet, Suzanne .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2006, 7 (11) :803-812
[2]
Physicochemical modelling of cell signalling pathways [J].
Aldridge, Bree B. ;
Burke, John M. ;
Lauffenburger, Douglas A. ;
Sorger, Peter K. .
NATURE CELL BIOLOGY, 2006, 8 (11) :1195-1203
[3]
Targeted polypharmacology: discovery of dual inhibitors of tyrosine and phosphoinositide kinases [J].
Apsel, Beth ;
Blair, Jimmy A. ;
Gonzalez, Beatriz ;
Nazif, Tamim M. ;
Feldman, Morri E. ;
Aizenstein, Brian ;
Hoffman, Randy ;
Williams, Roger L. ;
Shokat, Kevan M. ;
Knight, Zachary A. .
NATURE CHEMICAL BIOLOGY, 2008, 4 (11) :691-699
[4]
Fluorescent protein-based cellular assays analyzed by laser-scanning microplate cytometry in 1536-well plate format [J].
Auld, Douglas S. ;
Johnson, Ronald L. ;
Zhang, Ya-qin ;
Veith, Henrike ;
Jadhav, Ajit ;
Yasgar, Adam ;
Simeonov, Anton ;
Zheng, Wei ;
Martinez, Elisabeth D. ;
Westwick, John K. ;
Austin, Christopher P. ;
Inglese, James .
MEASURING BIOLOGICAL RESPONSES WITH AUTOMATED MICROSCOPY, 2006, 414 :566-589
[5]
A large-scale RNAi screen in human cells identifies new components of the p53 pathway [J].
Berns, K ;
Hijmans, EM ;
Mullenders, J ;
Brummelkamp, TR ;
Velds, A ;
Heimerikx, M ;
Kerkhoven, RM ;
Madiredjo, M ;
Nijkamp, W ;
Weigelt, B ;
Agami, R ;
Ge, W ;
Cavet, G ;
Linsley, PS ;
Beijersbergen, RL ;
Bernards, R .
NATURE, 2004, 428 (6981) :431-437
[6]
Integration of cytokine and heterologous receptor signaling pathways [J].
Bezbradica, Jelena S. ;
Medzhitov, Ruslan .
NATURE IMMUNOLOGY, 2009, 10 (04) :333-339
[7]
The art and design of genetic screens: RNA interference [J].
Boutros, Michael ;
Ahringer, Julie .
NATURE REVIEWS GENETICS, 2008, 9 (07) :554-566
[8]
Microfluidic single-cell analysis of intracellular compounds [J].
Chao, Tzu-Chiao ;
Ros, Alexandra .
JOURNAL OF THE ROYAL SOCIETY INTERFACE, 2008, 5 (SUPPL.2) :S139-S150
[9]
Integration of biological networks and gene expression data using Cytoscape [J].
Cline, Melissa S. ;
Smoot, Michael ;
Cerami, Ethan ;
Kuchinsky, Allan ;
Landys, Nerius ;
Workman, Chris ;
Christmas, Rowan ;
Avila-Campilo, Iliana ;
Creech, Michael ;
Gross, Benjamin ;
Hanspers, Kristina ;
Isserlin, Ruth ;
Kelley, Ryan ;
Killcoyne, Sarah ;
Lotia, Samad ;
Maere, Steven ;
Morris, John ;
Ono, Keiichiro ;
Pavlovic, Vuk ;
Pico, Alexander R. ;
Vailaya, Aditya ;
Wang, Peng-Liang ;
Adler, Annette ;
Conklin, Bruce R. ;
Hood, Leroy ;
Kuiper, Martin ;
Sander, Chris ;
Schmulevich, Ilya ;
Schwikowski, Benno ;
Warner, Guy J. ;
Ideker, Trey ;
Bader, Gary D. .
NATURE PROTOCOLS, 2007, 2 (10) :2366-2382
[10]
Variability and robustness in T cell activation from regulated heterogeneity in protein levels [J].
Feinerman, Ofer ;
Veiga, Joel ;
Dorfman, Jeffrey R. ;
Germain, Ronald N. ;
Altan-Bonnet, Gregoire .
SCIENCE, 2008, 321 (5892) :1081-1084