Automatic classification of prostate cancer Gleason scores from multiparametric magnetic resonance images

被引:378
作者
Fehr, Duc [1 ]
Veeraraghavan, Harini [1 ]
Wibmer, Andreas [2 ]
Gondo, Tatsuo [3 ]
Matsumoto, Kazuhiro [3 ]
Vargas, Herbert Alberto [2 ]
Sala, Evis [2 ]
Hricak, Hedvig [2 ]
Deasy, Joseph O. [1 ]
机构
[1] Mem Sloan Kettering Canc Ctr, Dept Med Phys, New York, NY 10021 USA
[2] Mem Sloan Kettering Canc Ctr, Dept Radiol, New York, NY 10021 USA
[3] Mem Sloan Kettering Canc Ctr, Dept Urol, New York, NY 10021 USA
关键词
APPARENT DIFFUSION-COEFFICIENT; COMPUTER-AIDED DIAGNOSIS; CONTRAST-ENHANCED MRI; ACTIVE SURVEILLANCE; SELECTION BIAS; T; COMBINATION; BIOPSY; TISSUE; DIFFERENTIATION;
D O I
10.1073/pnas.1505935112
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
070301 [无机化学]; 070403 [天体物理学]; 070507 [自然资源与国土空间规划学]; 090105 [作物生产系统与生态工程];
摘要
Noninvasive, radiological image-based detection and stratification of Gleason patterns can impact clinical outcomes, treatment selection, and the determination of disease status at diagnosis without subjecting patients to surgical biopsies. We present machine learning-based automatic classification of prostate cancer aggressiveness by combining apparent diffusion coefficient (ADC) and T2-weighted (T2-w) MRI-based texture features. Our approach achieved reasonably accurate classification of Gleason scores (GS) 6(3 + 3) vs. >= 7 and 7(3 + 4) vs. 7(4 + 3) despite the presence of highly unbalanced samples by using two different sample augmentation techniques followed by feature selection-based classification. Our method distinguished between GS 6(3 + 3) and >= 7 cancers with 93% accuracy for cancers occurring in both peripheral (PZ) and transition (TZ) zones and 92% for cancers occurring in the PZ alone. Our approach distinguished the GS 7(3 + 4) from GS 7(4 + 3) with 92% accuracy for cancers occurring in both the PZ and TZ and with 93% for cancers occurring in the PZ alone. In comparison, a classifier using only the ADC mean achieved a top accuracy of 58% for distinguishing GS 6(3 + 3) vs. GS >= 7 for cancers occurring in PZ and TZ and 63% for cancers occurring in PZ alone. The same classifier achieved an accuracy of 59% for distinguishing GS 7(3 + 4) from GS 7(4 + 3) occurring in the PZ and TZ and 60% for cancers occurring in PZ alone. Separate analysis of the cancers occurring in TZ alone was not performed owing to the limited number of samples. Our results suggest that texture features derived from ADC and T2-w MRI together with sample augmentation can help to obtain reasonably accurate classification of Gleason patterns.
引用
收藏
页码:E6265 / E6273
页数:9
相关论文
共 52 条
[1]
Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach [J].
Aerts, Hugo J. W. L. ;
Velazquez, Emmanuel Rios ;
Leijenaar, Ralph T. H. ;
Parmar, Chintan ;
Grossmann, Patrick ;
Cavalho, Sara ;
Bussink, Johan ;
Monshouwer, Rene ;
Haibe-Kains, Benjamin ;
Rietveld, Derek ;
Hoebers, Frank ;
Rietbergen, Michelle M. ;
Leemans, C. Rene ;
Dekker, Andre ;
Quackenbush, John ;
Gillies, Robert J. ;
Lambin, Philippe .
NATURE COMMUNICATIONS, 2014, 5
[2]
Transatlantic Consensus Group on active surveillance and focal therapy for prostate cancer [J].
Ahmed, Hashim U. ;
Akin, Oguz ;
Coleman, Jonathan A. ;
Crane, Sarah ;
Emberton, Mark ;
Goldenberg, Larry ;
Hricak, Hedvig ;
Kattan, Mike W. ;
Kurhanewicz, John ;
Moore, Caroline M. ;
Parker, Chris ;
Polascik, Thomas J. ;
Scardino, Peter ;
van As, Nicholas ;
Villers, Arnauld .
BJU INTERNATIONAL, 2012, 109 (11) :1636-1647
[3]
Selection bias in gene extraction on the basis of microarray gene-expression data [J].
Ambroise, C ;
McLachlan, GJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (10) :6562-6566
[4]
[Anonymous], 1908, BIOMETRIKA, V6, P1
[5]
[Anonymous], UMIACSTR201004
[6]
[Anonymous], 2004, ACM SIGKDD Explorations Newsletter, DOI DOI 10.1145/1007730.1007733
[7]
[Anonymous], VER 8 3 0 R2014A
[8]
Pathological Upgrading and Up Staging With Immediate Repeat Biopsy in Patients Eligible for Active Surveillance [J].
Berglund, Ryan K. ;
Masterson, Timothy A. ;
Vora, Kinjal C. ;
Eggener, Scott E. ;
Eastham, James A. ;
Guillonneau, Bertrand D. .
JOURNAL OF UROLOGY, 2008, 180 (05) :1964-1967
[9]
Cawley GC, 2010, J MACH LEARN RES, V11, P2079
[10]
Demsar J, 2006, J MACH LEARN RES, V7, P1