A Role for RNAi in the Selective Correction of DNA Methylation Defects

被引:282
作者
Teixeira, Felipe Karam [1 ,2 ]
Heredia, Fabiana [1 ]
Sarazin, Alexis [2 ]
Roudier, Francois [1 ,2 ]
Boccara, Martine [1 ,2 ]
Ciaudo, Constance [3 ,4 ]
Cruaud, Corinne [5 ]
Poulain, Julie [5 ]
Berdasco, Maria [6 ]
Fraga, Mario F. [6 ]
Voinnet, Olivier [3 ]
Wincker, Patrick [5 ]
Esteller, Manel [6 ]
Colot, Vincent [1 ,2 ]
机构
[1] Univ Evry Val Essonne, Inst Natl Rech Agron UMR 1165, CNRS, UMR 8114,Unite Rech Genom Vegetale, F-91057 Evry, France
[2] Ecole Normale Super, CNRS, Dept Biol, UMR 8186, F-75230 Paris 05, France
[3] CNRS, Inst Biol Mol Plantes, Unite Propre Rech 2357, F-67084 Strasbourg, France
[4] Inst Curie, CNRS, UMR 218, F-75248 Paris 05, France
[5] CEA, Inst Genom, F-91057 Evry, France
[6] Ctr Nacl Invest Oncol, Lab Epigenet Canc, Madrid 28029, Spain
关键词
EPIGENETIC INHERITANCE; ARABIDOPSIS; EPIGENOME; IV;
D O I
10.1126/science.1165313
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
DNA methylation is essential for silencing transposable elements and some genes in higher eukaryotes, which suggests that this modification must be tightly controlled. However, accidental changes in DNA methylation can be transmitted through mitosis (as in cancer) or meiosis, leading to epiallelic variation. We demonstrated the existence of an efficient mechanism that protects against transgenerational loss of DNA methylation in Arabidopsis. Remethylation is specific to the subset of heavily methylated repeats that are targeted by the RNA interference (RNAi) machinery. This process does not spread into flanking regions, is usually progressive over several generations, and faithfully restores wild-type methylation over target sequences in an RNAi-dependent manner. Our findings suggest an important role for RNAi in protecting genomes against long-term epigenetic defects.
引用
收藏
页码:1600 / 1604
页数:5
相关论文
共 23 条
[1]   Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning [J].
Cokus, Shawn J. ;
Feng, Suhua ;
Zhang, Xiaoyu ;
Chen, Zugen ;
Merriman, Barry ;
Haudenschild, Christian D. ;
Pradhan, Sriharsa ;
Nelson, Stanley F. ;
Pellegrini, Matteo ;
Jacobsen, Steven E. .
NATURE, 2008, 452 (7184) :215-219
[2]   Interchromosomal transfer of epigenetic states in Ascobolus: Transfer of DNA methylation is mechanistically related to homologous recombination [J].
Colot, V ;
Maloisel, L ;
Rossignol, JL .
CELL, 1996, 86 (06) :855-864
[3]   EPIGENETICS RNAi protects across the generations [J].
Flintoft, Louisa .
NATURE REVIEWS GENETICS, 2009, 10 (04) :220+221-221
[4]   Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1 [J].
Gendrel, AV ;
Lippman, Z ;
Yordan, C ;
Colot, V ;
Martienssen, RA .
SCIENCE, 2002, 297 (5588) :1871-1873
[5]   Epigenetic inheritance in plants [J].
Henderson, Ian R. ;
Jacobsen, Steven E. .
NATURE, 2007, 447 (7143) :418-424
[6]   Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning [J].
Henderson, Ian R. ;
Zhang, Xiaoyu ;
Lu, Cheng ;
Johnson, Lianna ;
Meyers, Blake C. ;
Green, Pamela J. ;
Jacobsen, Steven E. .
NATURE GENETICS, 2006, 38 (06) :721-725
[7]   RNA-directed DNA methylation mediated by DRD1 and Pol IVb: A versatile pathway for transcriptional gene silencing in plants [J].
Huettel, Bruno ;
Kanno, Tatsuo ;
Daxinger, Lucia ;
Bucher, Etienne ;
van der Winden, Johannes ;
Matzke, Antonius J. M. ;
Matzke, Marjorl .
BIOCHIMICA ET BIOPHYSICA ACTA-GENE STRUCTURE AND EXPRESSION, 2007, 1769 (5-6) :358-374
[8]   Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis [J].
Huettel, Bruno ;
Kanno, Tatsuo ;
Daxinger, Lucia ;
Aufsatz, Werner ;
Matzke, Antonius J. M. ;
Matzke, Marjori .
EMBO JOURNAL, 2006, 25 (12) :2828-2836
[9]   OPINION Epigenome dynamics: a quantitative genetics perspective [J].
Johannes, Frank ;
Colot, Vincent ;
Jansen, Ritsert C. .
NATURE REVIEWS GENETICS, 2008, 9 (11) :883-890
[10]   CHARACTERIZATION OF AN ARABIDOPSIS-THALIANA DNA HYPOMETHYLATION MUTANT [J].
KAKUTANI, T ;
JEDDELOH, JA ;
RICHARDS, EJ .
NUCLEIC ACIDS RESEARCH, 1995, 23 (01) :130-137